Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400039811 | Potato | nucleus | 95.61 | 95.61 |
| Solyc07g062470.2.1 | Tomato | nucleus | 55.61 | 77.55 |
| Solyc10g007310.1.1 | Tomato | plastid | 71.22 | 68.54 |
| Solyc10g008000.1.1 | Tomato | nucleus | 59.51 | 68.54 |
| Solyc02g076820.2.1 | Tomato | plastid | 62.93 | 67.19 |
| CDX88480 | Canola | nucleus | 57.56 | 63.78 |
| AT1G16910.1 | Thale cress | cytosol | 50.24 | 62.8 |
| Bra035066.1-P | Field mustard | nucleus | 57.56 | 62.11 |
| CDX87432 | Canola | nucleus | 57.56 | 62.11 |
| Solyc09g025280.1.1 | Tomato | nucleus | 51.22 | 61.4 |
| CDY14588 | Canola | nucleus | 56.1 | 60.53 |
| CDY26881 | Canola | nucleus | 56.1 | 60.21 |
| AT1G78815.1 | Thale cress | nucleus | 57.07 | 60.0 |
| Bra008382.1-P | Field mustard | nucleus | 55.61 | 59.69 |
| Solyc02g069510.1.1 | Tomato | nucleus | 47.8 | 54.14 |
| Solyc04g009980.2.1 | Tomato | nucleus, plastid | 47.32 | 53.89 |
| Solyc09g090180.1.1 | Tomato | plastid | 53.66 | 52.88 |
| Bra003637.1-P | Field mustard | nucleus | 39.51 | 50.62 |
| Solyc05g055020.2.1 | Tomato | nucleus | 49.27 | 47.87 |
| Solyc06g083860.2.1 | Tomato | nucleus | 50.73 | 47.71 |
| Solyc06g082210.1.1 | Tomato | nucleus | 49.27 | 45.5 |
Protein Annotations
| MapMan:35.1 | InterPro:ALOG_dom | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009299 | GO:GO:0009416 |
| GO:GO:0009628 | GO:GO:0009987 | InterPro:IPR006936 | UniProt:K4DCW1 | PFAM:PF04852 | PFscan:PS51697 |
| PANTHER:PTHR31165 | PANTHER:PTHR31165:SF37 | EnsemblPlantsGene:Solyc12g014260.1 | EnsemblPlants:Solyc12g014260.1.1 | UniParc:UPI000276A65C | SEG:seg |
Description
No Description!
Coordinates
chr12:-:5085293..5085910
Molecular Weight (calculated)
23070.3 Da
IEP (calculated)
9.891
GRAVY (calculated)
-0.888
Length
205 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNDQIIIEG EGGGGGGEGS SSRSKTTILI APSDDHHHHH QLPPVPPQLS RYESQKRRDW NTFGQYLKNQ RPPVPLSQCN YNHVLEFLRY LDQFGKTKVH
101: LHGCPFFGQP EPPGPCTCPL RQAWGSLDAL IGRLRAAYEE NGGLPENNPF ASGAIRVYLR EVRDFQAKAR GICYKKKKKK RKMQNKPTSS NAHEPTTTTF
201: QFQSS
101: LHGCPFFGQP EPPGPCTCPL RQAWGSLDAL IGRLRAAYEE NGGLPENNPF ASGAIRVYLR EVRDFQAKAR GICYKKKKKK RKMQNKPTSS NAHEPTTTTF
201: QFQSS
001: MSSPRERGKS LMESSGSEPP VTPSRYESQK RRDWNTFGQY LKNQRPPVPM SHCSCNHVLD FLRYLDQFGK TKVHVPGCMF YGQPEPPAPC TCPLRQAWGS
101: LDALIGRLRA AYEENGGPPE TNPFASGAIR VYLREVRECQ AKARGIPYKK KKKKKPTPEM GGGREDSSSS SSSFSFS
101: LDALIGRLRA AYEENGGPPE TNPFASGAIR VYLREVRECQ AKARGIPYKK KKKKKPTPEM GGGREDSSSS SSSFSFS
Arabidopsis Description
LSH10LSH10 [Source:UniProtKB/TrEMBL;Acc:A0A178VLX9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.