Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400027334 | Potato | nucleus | 97.19 | 97.19 |
| VIT_12s0028g02160.t01 | Wine grape | nucleus | 73.03 | 77.84 |
| KRH27046 | Soybean | nucleus | 73.6 | 74.86 |
| Bra000269.1-P | Field mustard | nucleus | 72.47 | 72.88 |
| CDY47983 | Canola | nucleus | 71.91 | 72.73 |
| Bra016865.1-P | Field mustard | nucleus | 71.91 | 72.73 |
| KRH22284 | Soybean | nucleus | 65.17 | 72.5 |
| AT2G42610.1 | Thale cress | nucleus | 71.91 | 72.32 |
| CDY14848 | Canola | nucleus | 71.91 | 72.32 |
| KRH25774 | Soybean | nucleus | 70.79 | 71.19 |
| KRH55744 | Soybean | nucleus | 71.35 | 70.95 |
| Bra004711.1-P | Field mustard | nucleus | 66.29 | 70.66 |
| CDY55387 | Canola | nucleus | 70.22 | 70.22 |
| Solyc02g076820.2.1 | Tomato | plastid | 69.1 | 64.06 |
| Solyc07g062470.2.1 | Tomato | nucleus | 52.25 | 63.27 |
| Solyc12g014260.1.1 | Tomato | nucleus | 68.54 | 59.51 |
| Solyc09g025280.1.1 | Tomato | nucleus | 56.18 | 58.48 |
| Solyc10g007310.1.1 | Tomato | plastid | 69.66 | 58.22 |
| Solyc04g009980.2.1 | Tomato | nucleus, plastid | 51.12 | 50.56 |
| Solyc02g069510.1.1 | Tomato | nucleus | 51.12 | 50.28 |
| Solyc09g090180.1.1 | Tomato | plastid | 55.62 | 47.6 |
| Solyc06g083860.2.1 | Tomato | nucleus | 55.62 | 45.41 |
| Solyc06g082210.1.1 | Tomato | nucleus | 55.62 | 44.59 |
| Solyc05g055020.2.1 | Tomato | nucleus | 52.25 | 44.08 |
Protein Annotations
| EnsemblPlants:Solyc10g008000.1.1 | EnsemblPlantsGene:Solyc10g008000.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009299 | GO:GO:0009416 |
| GO:GO:0009628 | GO:GO:0009987 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF9 |
| PFAM:PF04852 | PFscan:PS51697 | UniParc:UPI000276B5CC | UniProt:K4CXX7 | MapMan:35.1 | : |
Description
Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Source:Projected from Arabidopsis thaliana (AT2G42610) UniProtKB/Swiss-Prot;Acc:Q9S7R3]
Coordinates
chr10:+:2170166..2170702
Molecular Weight (calculated)
19997.7 Da
IEP (calculated)
9.611
GRAVY (calculated)
-0.787
Length
178 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSDIRGKD LAEGSSRSPG RDQPPSRYES QKRRDWNTFN HYLKNQRPPI LLPHCHSNHV LEFLRYLDQF GKTKVHLLGC MFYGQPDPPA PCTCPLRQAW
101: GSLDALIGRL RAAYEENGGS SETNPFASVG IRVYLREVKE CQAKARGIAY KKKQKKLANS PSKGDHDDAS CPGFLTFS
101: GSLDALIGRL RAAYEENGGS SETNPFASVG IRVYLREVKE CQAKARGIAY KKKQKKLANS PSKGDHDDAS CPGFLTFS
001: MSSPRERGKS LMESSGSEPP VTPSRYESQK RRDWNTFGQY LKNQRPPVPM SHCSCNHVLD FLRYLDQFGK TKVHVPGCMF YGQPEPPAPC TCPLRQAWGS
101: LDALIGRLRA AYEENGGPPE TNPFASGAIR VYLREVRECQ AKARGIPYKK KKKKKPTPEM GGGREDSSSS SSSFSFS
101: LDALIGRLRA AYEENGGPPE TNPFASGAIR VYLREVRECQ AKARGIPYKK KKKKKPTPEM GGGREDSSSS SSSFSFS
Arabidopsis Description
LSH10LSH10 [Source:UniProtKB/TrEMBL;Acc:A0A178VLX9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.