Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016865.1-P | Field mustard | nucleus | 98.31 | 98.86 |
| CDY47983 | Canola | nucleus | 98.31 | 98.86 |
| AT2G42610.1 | Thale cress | nucleus | 92.09 | 92.09 |
| CDY55387 | Canola | nucleus | 89.83 | 89.33 |
| VIT_12s0028g02160.t01 | Wine grape | nucleus | 76.27 | 80.84 |
| KRH27046 | Soybean | nucleus | 77.97 | 78.86 |
| PGSC0003DMT400052658 | Potato | nucleus | 75.71 | 77.46 |
| KRH55744 | Soybean | nucleus | 77.4 | 76.54 |
| KRH25774 | Soybean | nucleus | 75.71 | 75.71 |
| KRH22284 | Soybean | nucleus | 67.23 | 74.38 |
| PGSC0003DMT400027334 | Potato | nucleus | 73.45 | 73.03 |
| Solyc10g008000.1.1 | Tomato | nucleus | 72.32 | 71.91 |
| CDY67351 | Canola | nucleus | 64.97 | 59.59 |
| CDY01557 | Canola | nucleus | 63.84 | 59.16 |
| CDX76510 | Canola | nucleus | 64.41 | 59.07 |
| CDY34056 | Canola | nucleus | 64.41 | 59.07 |
| CDX88480 | Canola | nucleus | 61.58 | 58.92 |
| CDX78877 | Canola | nucleus | 64.97 | 58.67 |
| CDX87760 | Canola | nucleus | 59.32 | 58.33 |
| CDY10712 | Canola | cytosol, nucleus, plastid | 53.67 | 57.58 |
| CDY06030 | Canola | nucleus | 58.76 | 57.46 |
| CDX87432 | Canola | nucleus | 61.58 | 57.37 |
| CDY32697 | Canola | nucleus | 57.06 | 57.06 |
| CDY02038 | Canola | cytosol | 52.54 | 56.71 |
| CDY59510 | Canola | nucleus | 57.06 | 55.8 |
| CDY14588 | Canola | nucleus | 59.32 | 55.26 |
| CDY26881 | Canola | nucleus | 59.32 | 54.97 |
| CDY61050 | Canola | nucleus | 56.5 | 54.64 |
| CDY32977 | Canola | nucleus, plastid | 56.5 | 54.64 |
| CDX77619 | Canola | cytosol | 29.94 | 54.08 |
| CDY69731 | Canola | plastid | 59.32 | 53.85 |
| CDY35523 | Canola | plastid | 58.76 | 53.33 |
| CDX77531 | Canola | plastid | 59.32 | 52.76 |
| CDX85083 | Canola | plastid | 59.32 | 52.76 |
| CDY52479 | Canola | nucleus, plastid | 55.93 | 52.11 |
| CDX86199 | Canola | plastid | 56.5 | 52.08 |
| CDY57024 | Canola | nucleus, plastid | 55.93 | 51.56 |
| CDY10247 | Canola | nucleus, plastid | 57.63 | 51.52 |
| CDY06675 | Canola | nucleus, plastid | 57.63 | 51.52 |
| CDY21126 | Canola | nucleus, plastid | 54.24 | 50.53 |
| CDY64755 | Canola | nucleus, plastid | 54.8 | 50.52 |
| CDY59064 | Canola | nucleus | 56.5 | 50.51 |
| CDY52505 | Canola | nucleus, plastid | 54.24 | 50.26 |
| CDY05593 | Canola | nucleus, plastid | 54.24 | 50.26 |
| CDY30000 | Canola | nucleus, plastid | 53.67 | 50.0 |
| CDX94980 | Canola | nucleus | 55.93 | 50.0 |
| CDY52287 | Canola | nucleus | 55.93 | 50.0 |
| CDY20312 | Canola | nucleus | 55.93 | 50.0 |
| CDY09940 | Canola | nucleus | 55.93 | 50.0 |
| CDY63294 | Canola | nucleus | 51.41 | 49.46 |
| CDX74186 | Canola | nucleus, plastid | 52.54 | 48.95 |
| CDY49331 | Canola | nucleus, plastid | 53.11 | 47.96 |
| CDY24755 | Canola | nucleus, plastid | 58.19 | 47.91 |
| CDY10790 | Canola | nucleus | 58.19 | 47.91 |
| CDY42932 | Canola | nucleus, plastid | 53.11 | 47.72 |
| CDY57088 | Canola | nucleus | 58.19 | 47.47 |
| CDY57087 | Canola | nucleus | 58.19 | 47.47 |
| CDY15426 | Canola | nucleus | 58.19 | 47.47 |
| CDY32978 | Canola | cytosol, nucleus, plastid | 49.72 | 47.06 |
Protein Annotations
| EnsemblPlants:CDY14848 | EnsemblPlantsGene:GSBRNA2T00084733001 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF10 |
| PFAM:PF04852 | PFscan:PS51697 | ProteinID:CDY14848 | ProteinID:CDY14848.1 | SEG:seg | UniParc:UPI0004EE7884 |
| UniProt:A0A078FRA0 | MapMan:35.1 | : | : | : | : |
Description
BnaC04g48450DBnaC04g48450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FRA0]
Coordinates
chrLK032047:+:691982..694634
Molecular Weight (calculated)
19801.3 Da
IEP (calculated)
9.622
GRAVY (calculated)
-0.842
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSPGDRGKN FMESSGSETP VTPSRYESQK RRDWNTFGQY LKNQRPPVPM SHCSCNHVLD FLRYLDQFGK TKVHVFGCMF YGQPEPPAPC TCPLRQAWGS
101: LDALIGRLRA AYEENGGSPE TNPFATGAIR VYLREVRECQ AKARGIPYKK KKNKKPATEM SGGRDDSSSS SSSFNFS
101: LDALIGRLRA AYEENGGSPE TNPFATGAIR VYLREVRECQ AKARGIPYKK KKNKKPATEM SGGRDDSSSS SSSFNFS
001: MSSPRERGKS LMESSGSEPP VTPSRYESQK RRDWNTFGQY LKNQRPPVPM SHCSCNHVLD FLRYLDQFGK TKVHVPGCMF YGQPEPPAPC TCPLRQAWGS
101: LDALIGRLRA AYEENGGPPE TNPFASGAIR VYLREVRECQ AKARGIPYKK KKKKKPTPEM GGGREDSSSS SSSFSFS
101: LDALIGRLRA AYEENGGPPE TNPFASGAIR VYLREVRECQ AKARGIPYKK KKKKKPTPEM GGGREDSSSS SSSFSFS
Arabidopsis Description
LSH10LSH10 [Source:UniProtKB/TrEMBL;Acc:A0A178VLX9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.