Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_12s0028g02160.t01 | Wine grape | nucleus | 80.92 | 83.83 |
| KRH27046 | Soybean | nucleus | 79.19 | 78.29 |
| Bra000269.1-P | Field mustard | nucleus | 79.77 | 77.97 |
| Bra004711.1-P | Field mustard | nucleus | 75.14 | 77.84 |
| AT2G42610.1 | Thale cress | nucleus | 78.61 | 76.84 |
| Bra016865.1-P | Field mustard | nucleus | 77.46 | 76.14 |
| CDY47983 | Canola | nucleus | 77.46 | 76.14 |
| CDY14848 | Canola | nucleus | 77.46 | 75.71 |
| KRH55744 | Soybean | nucleus | 78.03 | 75.42 |
| CDY55387 | Canola | nucleus | 77.46 | 75.28 |
| PGSC0003DMT400027334 | Potato | nucleus | 76.88 | 74.72 |
| KRH25774 | Soybean | nucleus | 76.3 | 74.58 |
| KRH22284 | Soybean | nucleus | 68.79 | 74.38 |
| PGSC0003DMT400026433 | Potato | nucleus | 77.46 | 70.16 |
| PGSC0003DMT400039811 | Potato | nucleus | 75.14 | 63.41 |
| PGSC0003DMT400054899 | Potato | nucleus | 73.99 | 61.84 |
| PGSC0003DMT400018295 | Potato | nucleus | 67.05 | 60.73 |
| PGSC0003DMT400054474 | Potato | plastid | 55.49 | 54.86 |
| PGSC0003DMT400026698 | Potato | nucleus | 57.23 | 53.51 |
| PGSC0003DMT400044213 | Potato | mitochondrion | 61.85 | 52.71 |
| PGSC0003DMT400029945 | Potato | nucleus | 53.18 | 50.27 |
| PGSC0003DMT400051692 | Potato | nucleus | 58.96 | 49.04 |
| PGSC0003DMT400078091 | Potato | nucleus | 58.38 | 45.29 |
| PGSC0003DMT400060169 | Potato | nucleus, plastid | 54.34 | 44.98 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400052658 | EnsemblPlantsGene:PGSC0003DMG400020442 | EntrezGene:102600485 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 |
| PANTHER:PTHR31165:SF10 | PFAM:PF04852 | PFscan:PS51697 | PGSC:PGSC0003DMG400020442 | RefSeq:XP_006348870.1 | RefSeq:XP_015164872.1 |
| SEG:seg | UniParc:UPI000296A61A | UniProt:M1BTS7 | MapMan:35.1 | : | : |
Description
177 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400020442]
Coordinates
chr7:+:50186800..50191811
Molecular Weight (calculated)
19449.8 Da
IEP (calculated)
9.427
GRAVY (calculated)
-0.941
Length
173 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNFDRGKEL VEGSSRSPGD QPATPSRYES QKRRDWNTFG QYLRNQRPPV SMSQCNSNHV LEFLRYLDQF GKTKVHLQGC IFYGQPEPPA PCTCPLRQAW
101: GSLDALIGRL RAAYEENGGS PETNPFASGA IRVYLREVKE CQAKARGIPY KKKKKKASES KGDDDCTSSH PFS
101: GSLDALIGRL RAAYEENGGS PETNPFASGA IRVYLREVKE CQAKARGIPY KKKKKKASES KGDDDCTSSH PFS
001: MSSPRERGKS LMESSGSEPP VTPSRYESQK RRDWNTFGQY LKNQRPPVPM SHCSCNHVLD FLRYLDQFGK TKVHVPGCMF YGQPEPPAPC TCPLRQAWGS
101: LDALIGRLRA AYEENGGPPE TNPFASGAIR VYLREVRECQ AKARGIPYKK KKKKKPTPEM GGGREDSSSS SSSFSFS
101: LDALIGRLRA AYEENGGPPE TNPFASGAIR VYLREVRECQ AKARGIPYKK KKKKKPTPEM GGGREDSSSS SSSFSFS
Arabidopsis Description
LSH10LSH10 [Source:UniProtKB/TrEMBL;Acc:A0A178VLX9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.