CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH25774	Soybean	nucleus	94.97	96.05
KRH27046	Soybean	nucleus	84.92	86.86
VIT_12s0028g02160.t01	Wine grape	nucleus	78.77	84.43
KRH22284	Soybean	nucleus	74.86	83.75
Bra004711.1-P	Field mustard	nucleus	74.86	80.24
Bra000269.1-P	Field mustard	nucleus	78.21	79.1
PGSC0003DMT400052658	Potato	nucleus	75.42	78.03
AT2G42610.1	Thale cress	nucleus	77.09	77.97
Bra016865.1-P	Field mustard	nucleus	76.54	77.84
CDY47983	Canola	nucleus	76.54	77.84
CDY14848	Canola	nucleus	76.54	77.4
CDY55387	Canola	nucleus	76.54	76.97
KRH42865	Soybean	plastid	68.72	73.65
Solyc10g008000.1.1	Tomato	nucleus	70.95	71.35
PGSC0003DMT400027334	Potato	nucleus	70.95	71.35
KRH21273	Soybean	nucleus	69.27	68.51
KRH27347	Soybean	nucleus	70.39	68.48
KRH11015	Soybean	nucleus	68.72	67.96
KRH21973	Soybean	nucleus	72.07	66.49
KRH34151	Soybean	plastid	54.19	55.11
KRG92413	Soybean	nucleus	56.98	53.12
KRG92633	Soybean	nucleus	54.75	51.58
KRG97044	Soybean	plastid	52.51	51.37
KRH68792	Soybean	plastid	51.96	50.54
KRH34391	Soybean	nucleus	56.98	50.49
KRH32192	Soybean	nucleus	58.1	50.24
KRH56293	Soybean	nucleus	58.1	49.29
KRG95674	Soybean	nucleus	55.87	49.26
KRH67397	Soybean	nucleus	55.87	49.26
KRH58368	Soybean	nucleus	58.66	44.49
KRH17088	Soybean	nucleus	53.63	44.04
KRH72732	Soybean	nucleus	53.07	43.38
KRG98226	Soybean	nucleus	55.87	43.1
KRH30185	Soybean	nucleus	56.42	42.98
KRH42251	Soybean	plastid	58.1	42.11

Protein Annotations

EntrezGene:100815968	MapMan:35.1	EMBL:ACUP02004055	InterPro:ALOG_dom	EnsemblPlantsGene:GLYMA_06G277400	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009299	GO:GO:0009416	GO:GO:0009628	GO:GO:0009987	UniProt:I1KEN3
InterPro:IPR006936	EnsemblPlants:KRH55744	ProteinID:KRH55744	ProteinID:KRH55744.1	PFAM:PF04852	PFscan:PS51697
PANTHER:PTHR31165	PANTHER:PTHR31165:SF10	UniParc:UPI000233972D	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:-:46861488..46865316

Molecular Weight (calculated)

20101.6 Da

IEP (calculated)

9.410

GRAVY (calculated)

-0.852

Length

179 amino acids

Sequence
(BLAST)

001: MSSSGSHGAE GSSSNIPIEY QQQQQQSPVT LSRYESQKRR DWNTFGQYLK NQRPPVPLSQ CNCNQVLDFL RYLDQFGKTK VHLQGCMFYG QPEPPAPCTC
101: PLRQAWGSLD ALIGRLRAAY EENGGSPETN PFASGSIRVY LREVRECQAK ARGIPYKKKK KTTKGNMEES STSSSIHFS

Best Arabidopsis Sequence Match ( AT2G42610.1 )
(BLAST)

001: MSSPRERGKS LMESSGSEPP VTPSRYESQK RRDWNTFGQY LKNQRPPVPM SHCSCNHVLD FLRYLDQFGK TKVHVPGCMF YGQPEPPAPC TCPLRQAWGS
101: LDALIGRLRA AYEENGGPPE TNPFASGAIR VYLREVRECQ AKARGIPYKK KKKKKPTPEM GGGREDSSSS SSSFSFS

Arabidopsis Description

LSH10LSH10 [Source:UniProtKB/TrEMBL;Acc:A0A178VLX9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.