CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56293	Soybean	nucleus	95.17	93.36
GSMUA_Achr11P...	Banana	nucleus	38.65	85.11
VIT_07s0005g03530.t01	Wine grape	nucleus	73.91	83.61
KRG95674	Soybean	nucleus	79.23	80.79
Solyc09g025280.1.1	Tomato	nucleus	66.67	80.7
KRH67397	Soybean	nucleus	78.74	80.3
PGSC0003DMT400026698	Potato	nucleus	67.63	75.68
KRG92413	Soybean	nucleus	67.63	72.92
Zm00001d025863_P001	Maize	nucleus	57.97	71.43
KRH34151	Soybean	plastid	59.9	70.45
KRH34391	Soybean	nucleus	68.6	70.3
PGSC0003DMT400051692	Potato	nucleus	70.53	70.19
Solyc06g083860.2.1	Tomato	nucleus	71.5	67.89
GSMUA_Achr5P18640_001	Banana	nucleus	56.04	67.44
KRG92633	Soybean	nucleus	61.84	67.37
Bra018263.1-P	Field mustard	nucleus	69.57	66.98
CDY10790	Canola	nucleus	69.57	66.98
CDY24755	Canola	nucleus, plastid	69.57	66.98
GSMUA_Achr5P03870_001	Banana	nucleus	55.56	66.47
GSMUA_Achr1P09270_001	Banana	nucleus	55.07	66.28
AT2G31160.1	Thale cress	nucleus	70.05	66.21
Os04t0516200-01	Rice	nucleus	64.25	65.84
EES11114	Sorghum	nucleus	63.28	65.83
Zm00001d003057_P001	Maize	nucleus	63.28	65.5
CDY15426	Canola	nucleus	68.6	65.44
CDY57087	Canola	nucleus	68.6	65.44
CDY57088	Canola	nucleus	68.6	65.44
Bra021707.1-P	Field mustard	nucleus	68.6	65.44
TraesCS6B01G256500.1	Wheat	nucleus	62.8	65.0
HORVU2Hr1G089190.1	Barley	nucleus	62.32	64.82
TraesCS2D01G378900.1	Wheat	nucleus	62.8	64.68
GSMUA_Achr4P21940_001	Banana	nucleus	54.59	64.57
KRG97044	Soybean	plastid	57.0	64.48
TraesCS6D01G209700.1	Wheat	nucleus	62.8	64.36
TraesCS6A01G225000.1	Wheat	nucleus	62.8	64.36
TraesCS2A01G382500.1	Wheat	nucleus	62.32	64.18
GSMUA_Achr5P14570_001	Banana	nucleus	53.62	64.16
HORVU6Hr1G058340.2	Barley	nucleus	62.8	63.73
TraesCS2B01G399800.1	Wheat	nucleus	61.84	63.68
Zm00001d051143_P001	Maize	nucleus	61.84	63.37
Zm00001d017263_P001	Maize	nucleus	62.32	63.24
KRH68792	Soybean	plastid	56.04	63.04
KRH42865	Soybean	plastid	50.72	62.87
Os10t0478000-01	Rice	nucleus	61.84	62.75
TraesCS1B01G172100.1	Wheat	nucleus	62.32	62.62
TraesCS1D01G153700.1	Wheat	nucleus	62.32	62.62
KXG30661	Sorghum	nucleus	62.8	62.5
Zm00001d014032_P001	Maize	nucleus	62.8	61.9
Os02t0623400-00	Rice	nucleus	62.32	61.72
Zm00001d032696_P001	Maize	nucleus	63.28	61.5
GSMUA_AchrUn_...	Banana	nucleus	45.41	61.04
GSMUA_Achr4P28760_001	Banana	nucleus	53.62	60.66
GSMUA_Achr1P05650_001	Banana	nucleus	47.83	60.37
KRH27046	Soybean	nucleus	50.72	60.0
KRH25774	Soybean	nucleus	50.72	59.32
KRH21273	Soybean	nucleus	51.21	58.56
KXG38327	Sorghum	nucleus	62.8	58.3
KRH55744	Soybean	nucleus	50.24	58.1
KRH11015	Soybean	nucleus	50.72	58.01
GSMUA_Achr6P36540_001	Banana	nucleus	44.93	57.76
KRH22284	Soybean	nucleus	44.44	57.5
HORVU1Hr1G041240.5	Barley	nucleus	62.32	56.83
KRH27347	Soybean	nucleus	50.24	56.52
Zm00001d051966_P001	Maize	nucleus	65.22	54.88
Zm00001d018433_P001	Maize	nucleus	64.73	54.25
EES05986	Sorghum	nucleus	65.7	54.18
TraesCS6A01G377300.1	Wheat	nucleus	65.22	53.57
TraesCS6B01G414700.1	Wheat	nucleus	65.22	53.57
TraesCS6D01G361900.1	Wheat	nucleus	65.22	53.57
TraesCS1A01G154900.1	Wheat	nucleus	62.32	53.53
Os02t0811000-01	Rice	nucleus	63.77	53.23
KRH21973	Soybean	nucleus	49.28	52.58
KRG98226	Soybean	nucleus	58.45	52.16
HORVU6Hr1G088790.1	Barley	nucleus	64.25	51.95
KRH17088	Soybean	nucleus	54.59	51.83
KRH72732	Soybean	nucleus	54.59	51.6
KRH30185	Soybean	nucleus	57.0	50.21
KRH58368	Soybean	nucleus	57.0	50.0
KRH42251	Soybean	plastid	56.52	47.37

Protein Annotations

EntrezGene:100803605	MapMan:35.1	EMBL:ACUP02006104	InterPro:ALOG_dom	EnsemblPlantsGene:GLYMA_10G037600	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009299	GO:GO:0009416	GO:GO:0009628	GO:GO:0009987	UniProt:I1L8E6
InterPro:IPR006936	EnsemblPlants:KRH32192	ProteinID:KRH32192	ProteinID:KRH32192.1	PFAM:PF04852	PFscan:PS51697
PANTHER:PTHR31165	PANTHER:PTHR31165:SF38	UniParc:UPI000233CE05	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr10:-:3320340..3322228

Molecular Weight (calculated)

23247.5 Da

IEP (calculated)

10.159

GRAVY (calculated)

-0.865

Length

207 amino acids

Sequence
(BLAST)

001: MDSIQEFMES CNTDITTTTA TTTSNSLVGS SNSPSASSTT SSRYENQKRR DWNTFGQYLK NHRPPLSLSR CSGAHVLEFL RYLDQFGKTK VHTPICPFYG
101: HPNPPAPCPC PLRQAWGSLD ALIGRLRAAF EENGGKPETN PFGARAVRLY LREVRELQSK ARGISYEKKK RKRPPPPPPP QQQLQQSLPL PLHHHHHHHL
201: PPPGATQ

Best Arabidopsis Sequence Match ( AT1G07090.1 )
(BLAST)

001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP

Arabidopsis Description

LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.