Factsheet for VIT_07s0005g03530.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	nucleus	41.53	80.85
Solyc09g025280.1.1	Tomato	nucleus	73.77	78.95
KRG95674	Soybean	nucleus	83.61	75.37
KRH67397	Soybean	nucleus	83.61	75.37
PGSC0003DMT400026698	Potato	nucleus	75.96	75.14
KRH32192	Soybean	nucleus	83.61	73.91
KRH56293	Soybean	nucleus	83.06	72.04
VIT_05s0049g01170.t01	Wine grape	nucleus	77.6	70.65
Zm00001d025863_P001	Maize	nucleus	63.39	69.05
CDY24755	Canola	nucleus, plastid	77.6	66.05
VIT_14s0036g00540.t01	Wine grape	plastid	68.85	65.97
Bra018263.1-P	Field mustard	nucleus	77.05	65.58
CDY10790	Canola	nucleus	77.05	65.58
AT2G31160.1	Thale cress	nucleus	78.14	65.3
GSMUA_Achr5P18640_001	Banana	nucleus	61.2	65.12
CDY57088	Canola	nucleus	77.05	64.98
CDY57087	Canola	nucleus	77.05	64.98
CDY15426	Canola	nucleus	77.05	64.98
Bra021707.1-P	Field mustard	nucleus	77.05	64.98
PGSC0003DMT400051692	Potato	nucleus	73.22	64.42
TraesCS6B01G256500.1	Wheat	nucleus	69.95	64.0
GSMUA_Achr1P09270_001	Banana	nucleus	60.11	63.95
Zm00001d051143_P001	Maize	nucleus	70.49	63.86
EES11114	Sorghum	nucleus	69.4	63.82
Zm00001d003057_P001	Maize	nucleus	69.4	63.5
Os04t0516200-01	Rice	nucleus	69.95	63.37
HORVU2Hr1G089190.1	Barley	nucleus	68.85	63.32
TraesCS2D01G378900.1	Wheat	nucleus	69.4	63.18
GSMUA_Achr5P03870_001	Banana	nucleus	59.56	63.01
TraesCS6D01G209700.1	Wheat	nucleus	69.4	62.87
TraesCS6A01G225000.1	Wheat	nucleus	69.4	62.87
Solyc06g083860.2.1	Tomato	nucleus	74.86	62.84
HORVU6Hr1G058340.2	Barley	nucleus	69.95	62.75
TraesCS2B01G399800.1	Wheat	nucleus	68.85	62.69
TraesCS2A01G382500.1	Wheat	nucleus	68.85	62.69
GSMUA_Achr5P14570_001	Banana	nucleus	59.02	62.43
VIT_12s0028g02160.t01	Wine grape	nucleus	56.83	62.28
Zm00001d017263_P001	Maize	nucleus	69.4	62.25
KXG30661	Sorghum	nucleus	70.49	62.02
VIT_10s0003g01280.t01	Wine grape	nucleus	59.02	61.71
GSMUA_Achr4P21940_001	Banana	nucleus	58.47	61.14
Zm00001d014032_P001	Maize	nucleus	69.95	60.95
Os02t0623400-00	Rice	nucleus	69.4	60.77
TraesCS1B01G172100.1	Wheat	nucleus	68.31	60.68
TraesCS1D01G153700.1	Wheat	nucleus	68.31	60.68
Zm00001d032696_P001	Maize	nucleus	69.95	60.09
GSMUA_Achr4P28760_001	Banana	nucleus	59.56	59.56
Os10t0478000-01	Rice	nucleus	66.12	59.31
GSMUA_AchrUn_...	Banana	nucleus	49.73	59.09
GSMUA_Achr1P05650_001	Banana	nucleus	51.91	57.93
GSMUA_Achr6P36540_001	Banana	nucleus	50.82	57.76
KXG38327	Sorghum	nucleus	69.95	57.4
HORVU1Hr1G041240.5	Barley	nucleus	68.85	55.51
VIT_10s0003g05690.t01	Wine grape	plastid	71.58	52.82
Zm00001d051966_P001	Maize	nucleus	70.49	52.44
VIT_06s0004g07090.t01	Wine grape	nucleus	65.57	51.95
TraesCS1A01G154900.1	Wheat	nucleus	68.31	51.87
Zm00001d018433_P001	Maize	nucleus	69.95	51.82
EES05986	Sorghum	nucleus	71.04	51.79
Os02t0811000-01	Rice	nucleus	69.95	51.61
TraesCS6D01G361900.1	Wheat	nucleus	71.04	51.59
TraesCS6B01G414700.1	Wheat	nucleus	71.04	51.59
TraesCS6A01G377300.1	Wheat	nucleus	71.04	51.59
HORVU6Hr1G088790.1	Barley	nucleus	70.49	50.39
VIT_19s0014g01350.t01	Wine grape	nucleus	54.64	45.45

Protein Annotations

EntrezGene:100244642	wikigene:100244642	MapMan:35.1	InterPro:ALOG_dom	EMBL:AM433065	ProteinID:CAN67056
ProteinID:CAN67056.1	ProteinID:CCB60126	ProteinID:CCB60126.1	UniProt:F6HZL1	EMBL:FN596502	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009299	GO:GO:0009416	GO:GO:0009628	GO:GO:0009987	InterPro:IPR006936
EntrezGene:LOC100244642	wikigene:LOC100244642	PFAM:PF04852	PFscan:PS51697	PANTHER:PTHR31165	PANTHER:PTHR31165:SF38
TIGR:TC65559	UniParc:UPI00019839CD	ArrayExpress:VIT_07s0005g03530	EnsemblPlantsGene:VIT_07s0005g03530	EnsemblPlants:VIT_07s0005g03530.t01	unigene:Vvi.14854
RefSeq:XP_002277848	RefSeq:XP_002277848.1	RefSeq:XP_010652376.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr7:+:6428124..6429437

Molecular Weight (calculated)

20357.0 Da

IEP (calculated)

10.287

GRAVY (calculated)

-0.844

Length

183 amino acids

Sequence
(BLAST)

001: MDSIPEMDSS NSENTSINTS SNSSAATSSS SASTTPSRYE NQKRRDWNTF GQYLKNHRPP LSLSRCSGAH VLEFLRYLDQ FGKTKVHTPI CPFYGHPNPP
101: APCPCPLRQA WGSLDALIGR LRAAFEENGG KPEANPFGAR AVRLYLREVR DLQSKARGIS YEKKKRKRLP QQMPPQLPPP GAS

Best Arabidopsis Sequence Match ( AT2G31160.1 )
(BLAST)

001: MDMIPQLMEG SSAYGGVTNL NIISNNSSSV TGATGGEATQ PLSSSSSPSA NSSRYENQKR RDWNTFGQYL RNHRPPLSLS RCSGAHVLEF LRYLDQFGKT
101: KVHTNICHFY GHPNPPAPCP CPLRQAWGSL DALIGRLRAA FEENGGKPET NPFGARAVRL YLREVRDMQS KARGVSYEKK KRKRPLPSSS TSSSSAVASH
201: QQFQMLPGTS STTQLKFEK

Arabidopsis Description

LSH3Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 [Source:UniProtKB/Swiss-Prot;Acc:O82268]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.