Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY57088 | Canola | nucleus | 100.0 | 100.0 |
| Bra021707.1-P | Field mustard | nucleus | 99.54 | 99.54 |
| CDY15426 | Canola | nucleus | 99.08 | 99.08 |
| CDY10790 | Canola | nucleus | 92.63 | 93.49 |
| CDY24755 | Canola | nucleus, plastid | 92.17 | 93.02 |
| AT2G31160.1 | Thale cress | nucleus | 91.71 | 90.87 |
| GSMUA_Achr11P... | Banana | nucleus | 34.56 | 79.79 |
| VIT_07s0005g03530.t01 | Wine grape | nucleus | 64.98 | 77.05 |
| Solyc09g025280.1.1 | Tomato | nucleus | 59.45 | 75.44 |
| PGSC0003DMT400026698 | Potato | nucleus | 60.83 | 71.35 |
| CDY35523 | Canola | plastid | 63.13 | 70.26 |
| CDY69731 | Canola | plastid | 62.67 | 69.74 |
| Zm00001d025863_P001 | Maize | nucleus | 53.92 | 69.64 |
| KRH67397 | Soybean | nucleus | 64.98 | 69.46 |
| CDX77531 | Canola | plastid | 63.59 | 69.35 |
| CDX85083 | Canola | plastid | 63.59 | 69.35 |
| KRG95674 | Soybean | nucleus | 64.52 | 68.97 |
| KRH32192 | Soybean | nucleus | 65.44 | 68.6 |
| KRH56293 | Soybean | nucleus | 64.98 | 66.82 |
| PGSC0003DMT400051692 | Potato | nucleus | 63.13 | 65.87 |
| CDY05593 | Canola | nucleus, plastid | 56.68 | 64.4 |
| CDY52505 | Canola | nucleus, plastid | 56.68 | 64.4 |
| GSMUA_Achr5P18640_001 | Banana | nucleus | 50.69 | 63.95 |
| CDY52479 | Canola | nucleus, plastid | 55.76 | 63.68 |
| CDY32697 | Canola | nucleus | 51.61 | 63.28 |
| CDY57024 | Canola | nucleus, plastid | 55.76 | 63.02 |
| CDY64755 | Canola | nucleus, plastid | 55.76 | 63.02 |
| Solyc06g083860.2.1 | Tomato | nucleus | 63.13 | 62.84 |
| Os04t0516200-01 | Rice | nucleus | 58.06 | 62.38 |
| EES11114 | Sorghum | nucleus | 57.14 | 62.31 |
| GSMUA_Achr1P09270_001 | Banana | nucleus | 49.31 | 62.21 |
| Zm00001d003057_P001 | Maize | nucleus | 57.14 | 62.0 |
| CDX86199 | Canola | plastid | 54.84 | 61.98 |
| CDY59510 | Canola | nucleus | 51.61 | 61.88 |
| HORVU2Hr1G089190.1 | Barley | nucleus | 56.68 | 61.81 |
| TraesCS2D01G378900.1 | Wheat | nucleus | 57.14 | 61.69 |
| GSMUA_Achr5P03870_001 | Banana | nucleus | 48.85 | 61.27 |
| CDY10712 | Canola | cytosol, nucleus, plastid | 46.54 | 61.21 |
| TraesCS2A01G382500.1 | Wheat | nucleus | 56.68 | 61.19 |
| GSMUA_Achr4P21940_001 | Banana | nucleus | 49.31 | 61.14 |
| GSMUA_AchrUn_... | Banana | nucleus | 43.32 | 61.04 |
| CDY49331 | Canola | nucleus, plastid | 54.84 | 60.71 |
| TraesCS2B01G399800.1 | Wheat | nucleus | 56.22 | 60.7 |
| CDY21126 | Canola | nucleus, plastid | 53.0 | 60.53 |
| CDY42932 | Canola | nucleus, plastid | 54.84 | 60.41 |
| CDY02038 | Canola | cytosol | 45.62 | 60.37 |
| TraesCS1B01G172100.1 | Wheat | nucleus | 57.14 | 60.19 |
| TraesCS1D01G153700.1 | Wheat | nucleus | 57.14 | 60.19 |
| GSMUA_Achr5P14570_001 | Banana | nucleus | 47.93 | 60.12 |
| CDY30000 | Canola | nucleus, plastid | 52.53 | 60.0 |
| TraesCS6B01G256500.1 | Wheat | nucleus | 55.3 | 60.0 |
| Zm00001d014032_P001 | Maize | nucleus | 58.06 | 60.0 |
| Zm00001d051143_P001 | Maize | nucleus | 55.76 | 59.9 |
| Os10t0478000-01 | Rice | nucleus | 56.22 | 59.8 |
| CDY63294 | Canola | nucleus | 50.69 | 59.78 |
| Zm00001d032696_P001 | Maize | nucleus | 58.53 | 59.62 |
| CDY32977 | Canola | nucleus, plastid | 50.23 | 59.56 |
| CDY61050 | Canola | nucleus | 50.23 | 59.56 |
| CDX74186 | Canola | nucleus, plastid | 52.07 | 59.47 |
| TraesCS6A01G225000.1 | Wheat | nucleus | 55.3 | 59.41 |
| TraesCS6D01G209700.1 | Wheat | nucleus | 55.3 | 59.41 |
| Zm00001d017263_P001 | Maize | nucleus | 55.76 | 59.31 |
| HORVU6Hr1G058340.2 | Barley | nucleus | 55.3 | 58.82 |
| KXG30661 | Sorghum | nucleus | 56.22 | 58.65 |
| CDY47983 | Canola | nucleus | 47.47 | 58.52 |
| Os02t0623400-00 | Rice | nucleus | 56.22 | 58.37 |
| CDY14848 | Canola | nucleus | 47.47 | 58.19 |
| CDY55387 | Canola | nucleus | 47.0 | 57.3 |
| GSMUA_Achr4P28760_001 | Banana | nucleus | 47.93 | 56.83 |
| CDX94980 | Canola | nucleus | 51.61 | 56.57 |
| CDY09940 | Canola | nucleus | 51.61 | 56.57 |
| CDY20312 | Canola | nucleus | 51.61 | 56.57 |
| CDY52287 | Canola | nucleus | 51.61 | 56.57 |
| CDY59064 | Canola | nucleus | 51.61 | 56.57 |
| KXG38327 | Sorghum | nucleus | 58.06 | 56.5 |
| HORVU1Hr1G041240.5 | Barley | nucleus | 58.06 | 55.51 |
| CDY06675 | Canola | nucleus, plastid | 50.23 | 55.05 |
| CDY10247 | Canola | nucleus, plastid | 50.23 | 55.05 |
| GSMUA_Achr1P05650_001 | Banana | nucleus | 41.01 | 54.27 |
| Zm00001d051966_P001 | Maize | nucleus | 60.37 | 53.25 |
| Zm00001d018433_P001 | Maize | nucleus | 60.37 | 53.04 |
| GSMUA_Achr6P36540_001 | Banana | nucleus | 39.17 | 52.8 |
| Os02t0811000-01 | Rice | nucleus | 59.91 | 52.42 |
| TraesCS6A01G377300.1 | Wheat | nucleus | 60.83 | 52.38 |
| TraesCS6B01G414700.1 | Wheat | nucleus | 60.83 | 52.38 |
| TraesCS6D01G361900.1 | Wheat | nucleus | 60.83 | 52.38 |
| CDY32978 | Canola | cytosol, nucleus, plastid | 44.7 | 51.87 |
| EES05986 | Sorghum | nucleus | 59.91 | 51.79 |
| TraesCS1A01G154900.1 | Wheat | nucleus | 57.14 | 51.45 |
| HORVU6Hr1G088790.1 | Barley | nucleus | 60.37 | 51.17 |
| CDX88480 | Canola | nucleus | 42.86 | 50.27 |
| CDX87432 | Canola | nucleus | 42.86 | 48.95 |
| CDY06030 | Canola | nucleus | 40.55 | 48.62 |
| CDX87760 | Canola | nucleus | 40.09 | 48.33 |
| CDY67351 | Canola | nucleus | 42.86 | 48.19 |
| CDX77619 | Canola | cytosol | 21.66 | 47.96 |
| CDY14588 | Canola | nucleus | 41.94 | 47.89 |
| CDX76510 | Canola | nucleus | 42.4 | 47.67 |
| CDY01557 | Canola | nucleus | 41.94 | 47.64 |
| CDY26881 | Canola | nucleus | 41.94 | 47.64 |
| CDX78877 | Canola | nucleus | 42.86 | 47.45 |
| CDY34056 | Canola | nucleus | 41.94 | 47.15 |
Protein Annotations
| EnsemblPlants:CDY57087 | EnsemblPlantsGene:GSBRNA2T00020541001 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF36 |
| PFAM:PF04852 | PFscan:PS51697 | ProteinID:CDY57087 | ProteinID:CDY57087.1 | ProteinID:CDY57088.1 | SEG:seg |
| UniParc:UPI0004EE8462 | UniProt:A0A078J420 | MapMan:35.1 | : | : | : |
Description
BnaA04g28750DBnaA04g28750D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J420]
Coordinates
chrLK033546:+:13940..14593
Molecular Weight (calculated)
24070.4 Da
IEP (calculated)
10.305
GRAVY (calculated)
-0.669
Length
217 amino acids
Sequence
(BLAST)
(BLAST)
001: MDMFPQLMEG SSAYSDATNL SIIANISSSS VTEATATQPP SSSSPSANSS RYENQKRRDW NTFGQYLRNH RPPLSLSRCS GAHVLEFLRY LDQFGKTKVH
101: TTVCHFYGHP NPPAPCPCPL RQAWGSLDAL IGRLRAAFEE NGGKPETNPF GARAVRLYLR EVRDMQSKAR GVSYEKKKRK RPVPQLSASS SSAVASHQQF
201: QMLPGTSSTT QISKFEK
101: TTVCHFYGHP NPPAPCPCPL RQAWGSLDAL IGRLRAAFEE NGGKPETNPF GARAVRLYLR EVRDMQSKAR GVSYEKKKRK RPVPQLSASS SSAVASHQQF
201: QMLPGTSSTT QISKFEK
001: MDMIPQLMEG SSAYGGVTNL NIISNNSSSV TGATGGEATQ PLSSSSSPSA NSSRYENQKR RDWNTFGQYL RNHRPPLSLS RCSGAHVLEF LRYLDQFGKT
101: KVHTNICHFY GHPNPPAPCP CPLRQAWGSL DALIGRLRAA FEENGGKPET NPFGARAVRL YLREVRDMQS KARGVSYEKK KRKRPLPSSS TSSSSAVASH
201: QQFQMLPGTS STTQLKFEK
101: KVHTNICHFY GHPNPPAPCP CPLRQAWGSL DALIGRLRAA FEENGGKPET NPFGARAVRL YLREVRDMQS KARGVSYEKK KRKRPLPSSS TSSSSAVASH
201: QQFQMLPGTS STTQLKFEK
Arabidopsis Description
LSH3Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 [Source:UniProtKB/Swiss-Prot;Acc:O82268]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.