Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G18610.1 | Thale cress | nucleus | 89.53 | 89.53 |
| CDX78877 | Canola | nucleus | 90.58 | 88.27 |
| CDY67351 | Canola | nucleus | 89.01 | 88.08 |
| CDX76510 | Canola | nucleus | 88.48 | 87.56 |
| CDY34056 | Canola | nucleus | 86.91 | 86.01 |
| CDX87760 | Canola | nucleus | 70.68 | 75.0 |
| CDY06030 | Canola | nucleus | 68.59 | 72.38 |
| CDX77619 | Canola | cytosol | 35.08 | 68.37 |
| KRH42865 | Soybean | plastid | 58.64 | 67.07 |
| VIT_10s0003g01280.t01 | Wine grape | nucleus | 61.26 | 66.86 |
| CDY47983 | Canola | nucleus | 59.69 | 64.77 |
| CDY14848 | Canola | nucleus | 59.16 | 63.84 |
| CDY55387 | Canola | nucleus | 59.16 | 63.48 |
| KRH21273 | Soybean | nucleus | 59.16 | 62.43 |
| KRH11015 | Soybean | nucleus | 59.16 | 62.43 |
| PGSC0003DMT400026433 | Potato | nucleus | 59.69 | 59.69 |
| Solyc02g076820.2.1 | Tomato | plastid | 59.16 | 58.85 |
| CDY02038 | Canola | cytosol | 49.21 | 57.32 |
| CDY10712 | Canola | cytosol, nucleus, plastid | 49.21 | 56.97 |
| CDX88480 | Canola | nucleus | 54.97 | 56.76 |
| CDX87432 | Canola | nucleus | 54.97 | 55.26 |
| CDY14588 | Canola | nucleus | 53.4 | 53.68 |
| CDY26881 | Canola | nucleus | 53.4 | 53.4 |
| CDY32697 | Canola | nucleus | 48.17 | 51.98 |
| CDY69731 | Canola | plastid | 52.88 | 51.79 |
| CDY06675 | Canola | nucleus, plastid | 53.4 | 51.52 |
| CDY10247 | Canola | nucleus, plastid | 53.4 | 51.52 |
| CDY35523 | Canola | plastid | 52.36 | 51.28 |
| CDY59510 | Canola | nucleus | 48.17 | 50.83 |
| CDX77531 | Canola | plastid | 52.88 | 50.75 |
| CDX85083 | Canola | plastid | 52.88 | 50.75 |
| CDY32977 | Canola | nucleus, plastid | 48.17 | 50.27 |
| CDY61050 | Canola | nucleus | 48.17 | 50.27 |
| CDX74186 | Canola | nucleus, plastid | 49.74 | 50.0 |
| CDY63294 | Canola | nucleus | 48.17 | 50.0 |
| CDX86199 | Canola | plastid | 49.74 | 49.48 |
| CDY49331 | Canola | nucleus, plastid | 50.26 | 48.98 |
| CDY21126 | Canola | nucleus, plastid | 48.69 | 48.95 |
| CDY52479 | Canola | nucleus, plastid | 48.69 | 48.95 |
| CDY42932 | Canola | nucleus, plastid | 50.26 | 48.73 |
| CDY59064 | Canola | nucleus | 50.26 | 48.48 |
| CDY57024 | Canola | nucleus, plastid | 48.69 | 48.44 |
| CDY30000 | Canola | nucleus, plastid | 48.17 | 48.42 |
| CDY52505 | Canola | nucleus, plastid | 48.17 | 48.17 |
| CDY09940 | Canola | nucleus | 49.74 | 47.98 |
| CDY52287 | Canola | nucleus | 49.74 | 47.98 |
| CDX94980 | Canola | nucleus | 49.74 | 47.98 |
| CDY20312 | Canola | nucleus | 49.74 | 47.98 |
| CDY64755 | Canola | nucleus, plastid | 48.17 | 47.92 |
| CDY05593 | Canola | nucleus, plastid | 47.64 | 47.64 |
| CDY32978 | Canola | cytosol, nucleus, plastid | 43.98 | 44.92 |
| CDY10790 | Canola | nucleus | 47.64 | 42.33 |
| CDY57088 | Canola | nucleus | 47.64 | 41.94 |
| CDY57087 | Canola | nucleus | 47.64 | 41.94 |
| CDY15426 | Canola | nucleus | 47.64 | 41.94 |
| CDY24755 | Canola | nucleus, plastid | 47.12 | 41.86 |
Protein Annotations
| EnsemblPlants:CDY01557 | EnsemblPlantsGene:GSBRNA2T00112593001 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF8 |
| PFAM:PF04852 | PFscan:PS51697 | ProteinID:CDY01557 | ProteinID:CDY01557.1 | SEG:seg | UniParc:UPI0004EEF3BF |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaC07g35470D
Coordinates
chrLK031927:+:581002..581577
Molecular Weight (calculated)
21674.7 Da
IEP (calculated)
10.370
GRAVY (calculated)
-0.925
Length
191 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSDHRISTT KDPPEHPSSS SSHQKQPLPP QLQPQQPLSR YESQKRRDWN TFIQYLKSQN PPLLMPQFDY THVLCFLRYL DQFGKTKVHQ QACVFFGQPD
101: PPGPCTCPLK QAWGSLDALI GRLRAAYEEH GGGSPDTNPF ANGSIRVHLR EVRESQAKAR GIPYRKKKRR KIKNDAVVVK KDVANSSSTP N
101: PPGPCTCPLK QAWGSLDALI GRLRAAYEEH GGGSPDTNPF ANGSIRVHLR EVRESQAKAR GIPYRKKKRR KIKNDAVVVK KDVANSSSTP N
001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
Arabidopsis Description
LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.