Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 3
- mitochondrion 1
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040188.1-P | Field mustard | nucleus, plastid | 98.98 | 98.98 |
| CDY49331 | Canola | nucleus, plastid | 98.48 | 98.98 |
| AT3G04510.1 | Thale cress | nucleus, plastid | 91.88 | 90.05 |
| CDX74186 | Canola | nucleus, plastid | 83.25 | 86.32 |
| CDY21126 | Canola | nucleus, plastid | 83.25 | 86.32 |
| CDY30000 | Canola | nucleus, plastid | 82.23 | 85.26 |
| CDY63294 | Canola | nucleus | 78.17 | 83.7 |
| CDY05593 | Canola | nucleus, plastid | 79.19 | 81.68 |
| CDY52505 | Canola | nucleus, plastid | 78.68 | 81.15 |
| CDY52479 | Canola | nucleus, plastid | 77.16 | 80.0 |
| CDY64755 | Canola | nucleus, plastid | 77.67 | 79.69 |
| CDX86199 | Canola | plastid | 76.65 | 78.65 |
| CDY57024 | Canola | nucleus, plastid | 76.65 | 78.65 |
| GSMUA_Achr11P... | Banana | nucleus | 32.49 | 68.09 |
| KRH34151 | Soybean | plastid | 60.41 | 67.61 |
| Zm00001d025863_P001 | Maize | nucleus | 54.31 | 63.69 |
| KRG92633 | Soybean | nucleus | 60.91 | 63.16 |
| KRG97044 | Soybean | plastid | 58.38 | 62.84 |
| VIT_14s0036g00540.t01 | Wine grape | plastid | 60.91 | 62.83 |
| KRH68792 | Soybean | plastid | 57.36 | 61.41 |
| PGSC0003DMT400060169 | Potato | nucleus, plastid | 64.97 | 61.24 |
| Solyc04g009980.2.1 | Tomato | nucleus, plastid | 55.84 | 61.11 |
| Solyc05g055020.2.1 | Tomato | nucleus | 64.97 | 60.66 |
| CDY69731 | Canola | plastid | 59.9 | 60.51 |
| CDY35523 | Canola | plastid | 59.39 | 60.0 |
| CDX77531 | Canola | plastid | 60.41 | 59.8 |
| CDX85083 | Canola | plastid | 60.41 | 59.8 |
| CDY10712 | Canola | cytosol, nucleus, plastid | 49.75 | 59.39 |
| PGSC0003DMT400029945 | Potato | nucleus | 54.82 | 59.02 |
| CDY02038 | Canola | cytosol | 48.22 | 57.93 |
| GSMUA_Achr5P18640_001 | Banana | nucleus | 49.75 | 56.98 |
| EES11114 | Sorghum | nucleus | 56.35 | 55.78 |
| Zm00001d003057_P001 | Maize | nucleus | 56.35 | 55.5 |
| CDY32697 | Canola | nucleus | 49.75 | 55.37 |
| CDY10790 | Canola | nucleus | 60.41 | 55.35 |
| CDX77619 | Canola | cytosol | 27.41 | 55.1 |
| TraesCS6B01G256500.1 | Wheat | nucleus | 55.84 | 55.0 |
| TraesCS6A01G225000.1 | Wheat | nucleus | 56.35 | 54.95 |
| TraesCS6D01G209700.1 | Wheat | nucleus | 56.35 | 54.95 |
| GSMUA_Achr5P03870_001 | Banana | nucleus | 48.22 | 54.91 |
| CDY57087 | Canola | nucleus | 60.41 | 54.84 |
| CDY57088 | Canola | nucleus | 60.41 | 54.84 |
| HORVU2Hr1G089190.1 | Barley | nucleus | 55.33 | 54.77 |
| TraesCS2D01G378900.1 | Wheat | nucleus | 55.84 | 54.73 |
| CDY24755 | Canola | nucleus, plastid | 59.39 | 54.42 |
| HORVU6Hr1G058340.2 | Barley | nucleus | 56.35 | 54.41 |
| CDY15426 | Canola | nucleus | 59.9 | 54.38 |
| GSMUA_Achr5P14570_001 | Banana | nucleus | 47.72 | 54.34 |
| TraesCS2B01G399800.1 | Wheat | nucleus | 55.33 | 54.23 |
| CDY59510 | Canola | nucleus | 49.75 | 54.14 |
| Os04t0516200-01 | Rice | nucleus | 55.33 | 53.96 |
| Zm00001d051143_P001 | Maize | nucleus | 55.33 | 53.96 |
| Os10t0478000-01 | Rice | nucleus | 55.84 | 53.92 |
| TraesCS2A01G382500.1 | Wheat | nucleus | 54.82 | 53.73 |
| GSMUA_Achr4P21940_001 | Banana | nucleus | 47.72 | 53.71 |
| Zm00001d017263_P001 | Maize | nucleus | 55.33 | 53.43 |
| CDY47983 | Canola | nucleus | 47.72 | 53.41 |
| CDY55387 | Canola | nucleus | 48.22 | 53.37 |
| KXG30661 | Sorghum | nucleus | 56.35 | 53.37 |
| CDY14848 | Canola | nucleus | 47.72 | 53.11 |
| CDY06675 | Canola | nucleus, plastid | 52.79 | 52.53 |
| CDY10247 | Canola | nucleus, plastid | 52.79 | 52.53 |
| TraesCS1B01G172100.1 | Wheat | nucleus | 54.82 | 52.43 |
| TraesCS1D01G153700.1 | Wheat | nucleus | 54.82 | 52.43 |
| Zm00001d014032_P001 | Maize | nucleus | 55.84 | 52.38 |
| GSMUA_Achr1P09270_001 | Banana | nucleus | 45.69 | 52.33 |
| Os02t0623400-00 | Rice | nucleus | 54.82 | 51.67 |
| Zm00001d032696_P001 | Maize | nucleus | 55.84 | 51.64 |
| CDY32977 | Canola | nucleus, plastid | 47.72 | 51.37 |
| CDY61050 | Canola | nucleus | 47.72 | 51.37 |
| GSMUA_AchrUn_... | Banana | nucleus | 40.1 | 51.3 |
| GSMUA_Achr1P05650_001 | Banana | nucleus | 42.64 | 51.22 |
| CDY59064 | Canola | nucleus | 51.27 | 51.01 |
| CDX94980 | Canola | nucleus | 50.76 | 50.51 |
| CDY09940 | Canola | nucleus | 50.76 | 50.51 |
| CDY20312 | Canola | nucleus | 50.76 | 50.51 |
| CDY52287 | Canola | nucleus | 50.76 | 50.51 |
| CDY06030 | Canola | nucleus | 46.19 | 50.28 |
| GSMUA_Achr4P28760_001 | Banana | nucleus | 46.7 | 50.27 |
| CDY32978 | Canola | cytosol, nucleus, plastid | 47.72 | 50.27 |
| CDY01557 | Canola | nucleus | 48.73 | 50.26 |
| CDX76510 | Canola | nucleus | 49.24 | 50.26 |
| CDY67351 | Canola | nucleus | 49.24 | 50.26 |
| CDX87760 | Canola | nucleus | 45.69 | 50.0 |
| CDY34056 | Canola | nucleus | 48.73 | 49.74 |
| CDX88480 | Canola | nucleus | 46.7 | 49.73 |
| CDX78877 | Canola | nucleus | 49.24 | 49.49 |
| KXG38327 | Sorghum | nucleus | 55.84 | 49.33 |
| CDX87432 | Canola | nucleus | 46.7 | 48.42 |
| HORVU1Hr1G041240.5 | Barley | nucleus | 55.33 | 48.02 |
| GSMUA_Achr6P36540_001 | Banana | nucleus | 39.09 | 47.83 |
| CDY14588 | Canola | nucleus | 45.69 | 47.37 |
| CDY26881 | Canola | nucleus | 45.69 | 47.12 |
| Zm00001d051966_P001 | Maize | nucleus | 56.85 | 45.53 |
| Zm00001d018433_P001 | Maize | nucleus | 56.35 | 44.94 |
| TraesCS1A01G154900.1 | Wheat | nucleus | 54.82 | 44.81 |
| EES05986 | Sorghum | nucleus | 56.85 | 44.62 |
| Os02t0811000-01 | Rice | nucleus | 55.84 | 44.35 |
| TraesCS6A01G377300.1 | Wheat | nucleus | 56.35 | 44.05 |
| TraesCS6B01G414700.1 | Wheat | nucleus | 56.35 | 44.05 |
| TraesCS6D01G361900.1 | Wheat | nucleus | 56.35 | 44.05 |
| HORVU6Hr1G088790.1 | Barley | nucleus | 55.33 | 42.58 |
Protein Annotations
| EnsemblPlants:CDY42932 | EnsemblPlantsGene:GSBRNA2T00075670001 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF16 |
| PFAM:PF04852 | PFscan:PS51697 | ProteinID:CDY42932 | ProteinID:CDY42932.1 | SEG:seg | UniParc:UPI0004EE4DE1 |
| UniProt:A0A078HYG2 | MapMan:35.1 | : | : | : | : |
Description
BnaC05g47190DBnaC05g47190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HYG2]
Coordinates
chrLK032538:-:256726..257789
Molecular Weight (calculated)
22341.3 Da
IEP (calculated)
10.321
GRAVY (calculated)
-0.959
Length
197 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLISQNHNN KNPNTTLSTQ HASSPPPSSR YENQKRRDWN TFCQYLRNHR PPLSPPSCSG AHVLEFLRYL DQFGKTKVHH QNCAFFGLPN PPAPCPCPLR
101: QAWGSLDALI GRLRAAYEEN GGAPDTSPFG LRSVRIFLRE VRDFQAKSRG VSYEKKRKRV NNKQITQSPS QPPLPPQPLE QQQQGQSMMA NYHHGAT
101: QAWGSLDALI GRLRAAYEEN GGAPDTSPFG LRSVRIFLRE VRDFQAKSRG VSYEKKRKRV NNKQITQSPS QPPLPPQPLE QQQQGQSMMA NYHHGAT
001: MDLISQNHNN RNPNTSLSTQ TPSSFSSPPS SSRYENQKRR DWNTFCQYLR NHHPPLSLAS CSGAHVLDFL RYLDQFGKTK VHHQNCAFFG LPNPPAPCPC
101: PLRQAWGSLD ALIGRLRAAY EENGGAPETS PFGSRSVRIF LREVRDFQAK SRGVSYEKKR KRVNNKQITQ SQPQSQPPLP QQPQQEQGQS MMANYHHGAT
201: Q
101: PLRQAWGSLD ALIGRLRAAY EENGGAPETS PFGSRSVRIF LREVRDFQAK SRGVSYEKKR KRVNNKQITQ SQPQSQPPLP QQPQQEQGQS MMANYHHGAT
201: Q
Arabidopsis Description
LSH2Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M836]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.