Factsheet for PGSC0003DMT400060169

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400063187

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G28490.1	PGSC0003DMT400063187	AT5G62920.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g055020.2.1	Tomato	nucleus	92.34	91.47
GSMUA_Achr11P...	Banana	nucleus	32.06	71.28
AT5G28490.1	Thale cress	nucleus, plastid	62.68	68.95
CDY52505	Canola	nucleus, plastid	62.2	68.06
CDY05593	Canola	nucleus, plastid	62.2	68.06
Bra020610.1-P	Field mustard	nucleus, plastid	61.72	67.54
CDY52479	Canola	nucleus, plastid	61.24	67.37
CDY64755	Canola	nucleus, plastid	61.72	67.19
CDY57024	Canola	nucleus, plastid	61.72	67.19
Bra036134.1-P	Field mustard	nucleus, plastid	61.24	66.67
CDY49331	Canola	nucleus, plastid	61.72	65.82
CDX86199	Canola	plastid	59.81	65.1
KRG97044	Soybean	plastid	56.94	65.03
CDY42932	Canola	nucleus, plastid	61.24	64.97
Bra040188.1-P	Field mustard	nucleus, plastid	61.24	64.97
KRH34151	Soybean	plastid	54.55	64.77
CDY21126	Canola	nucleus, plastid	58.85	64.74
CDY30000	Canola	nucleus, plastid	58.85	64.74
CDY63294	Canola	nucleus	56.94	64.67
PGSC0003DMT400029945	Potato	nucleus	56.46	64.48
CDX74186	Canola	nucleus, plastid	58.37	64.21
Bra001109.1-P	Field mustard	nucleus, plastid	58.37	64.21
Bra009997.1-P	Field mustard	plastid	58.85	64.06
AT3G04510.1	Thale cress	nucleus, plastid	60.77	63.18
PGSC0003DMT400026698	Potato	nucleus	55.5	62.7
Zm00001d025863_P001	Maize	nucleus	50.24	62.5
KRH68792	Soybean	plastid	55.02	62.5
VIT_14s0036g00540.t01	Wine grape	plastid	56.94	62.3
KRG92633	Soybean	nucleus	55.5	61.05
PGSC0003DMT400054474	Potato	plastid	50.24	60.0
PGSC0003DMT400044213	Potato	mitochondrion	55.98	57.64
GSMUA_Achr5P18640_001	Banana	nucleus	47.37	57.56
GSMUA_Achr5P03870_001	Banana	nucleus	46.89	56.65
HORVU2Hr1G089190.1	Barley	nucleus	53.59	56.28
EES11114	Sorghum	nucleus	53.59	56.28
GSMUA_Achr5P14570_001	Banana	nucleus	46.41	56.07
Zm00001d003057_P001	Maize	nucleus	53.59	56.0
TraesCS2D01G378900.1	Wheat	nucleus	53.59	55.72
TraesCS2A01G382500.1	Wheat	nucleus	53.59	55.72
TraesCS2B01G399800.1	Wheat	nucleus	53.11	55.22
TraesCS6B01G256500.1	Wheat	nucleus	52.63	55.0
GSMUA_Achr4P21940_001	Banana	nucleus	45.93	54.86
TraesCS6A01G225000.1	Wheat	nucleus	52.63	54.46
TraesCS6D01G209700.1	Wheat	nucleus	52.63	54.46
Os04t0516200-01	Rice	nucleus	52.63	54.46
PGSC0003DMT400052658	Potato	nucleus	44.98	54.34
Zm00001d051143_P001	Maize	nucleus	52.15	53.96
HORVU6Hr1G058340.2	Barley	nucleus	52.63	53.92
Os10t0478000-01	Rice	nucleus	52.15	53.43
PGSC0003DMT400051692	Potato	nucleus	53.11	53.37
Zm00001d017263_P001	Maize	nucleus	51.67	52.94
Zm00001d014032_P001	Maize	nucleus	53.11	52.86
TraesCS1D01G153700.1	Wheat	nucleus	51.67	52.43
TraesCS1B01G172100.1	Wheat	nucleus	51.67	52.43
KXG30661	Sorghum	nucleus	52.15	52.4
Zm00001d032696_P001	Maize	nucleus	53.11	52.11
PGSC0003DMT400027334	Potato	nucleus	44.02	51.69
Os02t0623400-00	Rice	nucleus	51.67	51.67
GSMUA_Achr4P28760_001	Banana	nucleus	44.98	51.37
PGSC0003DMT400018295	Potato	nucleus	46.89	51.31
GSMUA_Achr1P09270_001	Banana	nucleus	42.11	51.16
PGSC0003DMT400026433	Potato	nucleus	46.41	50.79
KXG38327	Sorghum	nucleus	53.59	50.22
GSMUA_Achr1P05650_001	Banana	nucleus	38.76	49.39
PGSC0003DMT400039811	Potato	nucleus	48.33	49.27
PGSC0003DMT400078091	Potato	nucleus	52.15	48.88
PGSC0003DMT400054899	Potato	nucleus	48.33	48.79
GSMUA_AchrUn_...	Banana	nucleus	35.41	48.05
HORVU1Hr1G041240.5	Barley	nucleus	52.15	48.02
Zm00001d051966_P001	Maize	nucleus	54.55	46.34
Zm00001d018433_P001	Maize	nucleus	54.07	45.75
Os02t0811000-01	Rice	nucleus	54.07	45.56
EES05986	Sorghum	nucleus	54.55	45.42
TraesCS6B01G414700.1	Wheat	nucleus	54.55	45.24
TraesCS6D01G361900.1	Wheat	nucleus	54.55	45.24
TraesCS6A01G377300.1	Wheat	nucleus	54.55	45.24
TraesCS1A01G154900.1	Wheat	nucleus	51.67	44.81
GSMUA_Achr6P36540_001	Banana	nucleus	34.45	44.72
HORVU6Hr1G088790.1	Barley	nucleus	54.55	44.53
Bra040137.1-P	Field mustard	nucleus, plastid	59.33	41.75

Protein Annotations

EnsemblPlants:PGSC0003DMT400060169	EnsemblPlantsGene:PGSC0003DMG400023406	EntrezGene:102588665	InterPro:ALOG_dom	InterPro:IPR006936	PANTHER:PTHR31165
PANTHER:PTHR31165:SF16	PFAM:PF04852	PFscan:PS51697	PGSC:PGSC0003DMG400023406	RefSeq:XP_006345889.1	SEG:seg
UniParc:UPI000296EF41	UniProt:M1C5C1	MapMan:35.1	:	:	:

Description

Light-dependent short hypocotyls 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400023406]

Coordinates

chr5:-:50730131..50733129

Molecular Weight (calculated)

23359.5 Da

IEP (calculated)

9.714

GRAVY (calculated)

-0.684

Length

209 amino acids

Sequence
(BLAST)

001: MDFVIAQGNN FTTSSNNMVQ GTNFIANSTT MIASSVPPLS RYENQKRRDW NTFCQYVRNH QPPLSLPQCS SAQILEFLRY LDQFGKTKVH NQNCPFFGLL
101: NPPAPCPCPL RQAWGSLDAL IGRLRAAYEE NGGKPEMNPF GSRNVRLFLR EVRDFQSKSR GVSYEKKRKR PSSSTNNNKQ KTTVAVDGGD CGTGRCATFC
201: GYGNIGNDN

Best Arabidopsis Sequence Match ( AT5G28490.1 )
(BLAST)

001: MDLISHQPNK NPNSSTQLTP PSSSRYENQK RRDWNTFCQY LRNHRPPLSL PSCSGAHVLE FLRYLDQFGK TKVHHQNCAF FGLPNPPAPC PCPLRQAWGS
101: LDALIGRLRA AYEENGGPPE ANPFGSRAVR LFLREVRDFQ AKARGVSYEK KRKRVNRQKP QTQPPLQLQQ QQQQPQQGQS MMANYSGATV

Arabidopsis Description

LSH1Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 [Source:UniProtKB/Swiss-Prot;Acc:Q6NNI3]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.