Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os04t0516200-01 | Rice | nucleus | 80.77 | 83.17 |
| GSMUA_Achr11P... | Banana | nucleus | 37.5 | 82.98 |
| EES11114 | Sorghum | nucleus | 78.85 | 82.41 |
| TraesCS2D01G378900.1 | Wheat | nucleus | 78.37 | 81.09 |
| TraesCS2B01G399800.1 | Wheat | nucleus | 77.88 | 80.6 |
| HORVU2Hr1G089190.1 | Barley | nucleus | 76.92 | 80.4 |
| TraesCS2A01G382500.1 | Wheat | nucleus | 76.44 | 79.1 |
| Bra023738.1-P | Field mustard | plastid | 60.1 | 71.02 |
| VIT_07s0005g03530.t01 | Wine grape | nucleus | 62.02 | 70.49 |
| Solyc09g025280.1.1 | Tomato | nucleus | 57.69 | 70.18 |
| KRH34151 | Soybean | plastid | 58.17 | 68.75 |
| KXG38327 | Sorghum | nucleus | 73.08 | 68.16 |
| KRG92413 | Soybean | nucleus | 62.5 | 67.71 |
| CDY69731 | Canola | plastid | 62.5 | 66.67 |
| CDY35523 | Canola | plastid | 62.5 | 66.67 |
| KRH34391 | Soybean | nucleus | 64.42 | 66.34 |
| AT3G23290.2 | Thale cress | plastid | 62.02 | 66.15 |
| KRG97044 | Soybean | plastid | 57.69 | 65.57 |
| PGSC0003DMT400026698 | Potato | nucleus | 58.17 | 65.41 |
| KRG92633 | Soybean | nucleus | 59.62 | 65.26 |
| VIT_05s0049g01170.t01 | Wine grape | nucleus | 62.5 | 64.68 |
| CDX85083 | Canola | plastid | 61.54 | 64.32 |
| CDX77531 | Canola | plastid | 61.54 | 64.32 |
| Bra014935.1-P | Field mustard | plastid | 61.54 | 64.32 |
| KRH68792 | Soybean | plastid | 56.25 | 63.59 |
| VIT_14s0036g00540.t01 | Wine grape | plastid | 58.17 | 63.35 |
| KRH32192 | Soybean | nucleus | 62.5 | 62.8 |
| CDY52479 | Canola | nucleus, plastid | 57.21 | 62.63 |
| AT5G28490.1 | Thale cress | nucleus, plastid | 57.21 | 62.63 |
| KRG95674 | Soybean | nucleus | 61.06 | 62.56 |
| PGSC0003DMT400044213 | Potato | mitochondrion | 61.06 | 62.56 |
| KRH67397 | Soybean | nucleus | 61.06 | 62.56 |
| CDX86199 | Canola | plastid | 57.69 | 62.5 |
| GSMUA_Achr5P18640_001 | Banana | nucleus | 50.96 | 61.63 |
| Solyc09g090180.1.1 | Tomato | plastid | 61.54 | 61.54 |
| Bra009997.1-P | Field mustard | plastid | 56.73 | 61.46 |
| GSMUA_Achr5P03870_001 | Banana | nucleus | 50.96 | 61.27 |
| GSMUA_Achr5P14570_001 | Banana | nucleus | 50.96 | 61.27 |
| KRH56293 | Soybean | nucleus | 62.02 | 61.14 |
| CDY57024 | Canola | nucleus, plastid | 56.25 | 60.94 |
| Bra020610.1-P | Field mustard | nucleus, plastid | 55.77 | 60.73 |
| CDY64755 | Canola | nucleus, plastid | 55.77 | 60.42 |
| Bra036134.1-P | Field mustard | nucleus, plastid | 55.77 | 60.42 |
| CDY52505 | Canola | nucleus, plastid | 55.29 | 60.21 |
| CDY05593 | Canola | nucleus, plastid | 55.29 | 60.21 |
| PGSC0003DMT400051692 | Potato | nucleus | 60.1 | 60.1 |
| CDY63294 | Canola | nucleus | 52.4 | 59.24 |
| CDX74186 | Canola | nucleus, plastid | 53.85 | 58.95 |
| Bra001109.1-P | Field mustard | nucleus, plastid | 53.85 | 58.95 |
| GSMUA_Achr4P21940_001 | Banana | nucleus | 49.52 | 58.86 |
| OQU83235 | Sorghum | cytosol | 49.52 | 58.52 |
| Solyc06g083860.2.1 | Tomato | nucleus | 61.06 | 58.26 |
| PGSC0003DMT400029945 | Potato | nucleus | 50.48 | 57.38 |
| CDY21126 | Canola | nucleus, plastid | 52.4 | 57.37 |
| CDY30000 | Canola | nucleus, plastid | 51.92 | 56.84 |
| CDY24755 | Canola | nucleus, plastid | 58.65 | 56.74 |
| CDY10790 | Canola | nucleus | 58.65 | 56.74 |
| Bra018263.1-P | Field mustard | nucleus | 58.65 | 56.74 |
| Solyc04g009980.2.1 | Tomato | nucleus, plastid | 49.04 | 56.67 |
| CDY49331 | Canola | nucleus, plastid | 53.37 | 56.63 |
| CDY42932 | Canola | nucleus, plastid | 53.37 | 56.35 |
| GSMUA_Achr4P28760_001 | Banana | nucleus | 49.52 | 56.28 |
| CDY15426 | Canola | nucleus | 58.65 | 56.22 |
| Bra021707.1-P | Field mustard | nucleus | 58.65 | 56.22 |
| CDY57087 | Canola | nucleus | 58.65 | 56.22 |
| CDY57088 | Canola | nucleus | 58.65 | 56.22 |
| AT3G04510.1 | Thale cress | nucleus, plastid | 54.33 | 56.22 |
| Bra040188.1-P | Field mustard | nucleus, plastid | 52.88 | 55.84 |
| OQU87784 | Sorghum | nucleus | 57.69 | 55.81 |
| AT2G31160.1 | Thale cress | nucleus | 58.65 | 55.71 |
| EES05986 | Sorghum | nucleus | 65.38 | 54.18 |
| PGSC0003DMT400060169 | Potato | nucleus, plastid | 52.4 | 52.15 |
| Solyc05g055020.2.1 | Tomato | nucleus | 52.88 | 52.13 |
| EES04579 | Sorghum | nucleus | 59.13 | 47.67 |
| EES18364 | Sorghum | nucleus | 57.69 | 46.69 |
| OQU76862 | Sorghum | nucleus | 60.58 | 44.68 |
| KXG34092 | Sorghum | nucleus | 60.58 | 44.68 |
| EES19345 | Sorghum | nucleus, plastid | 61.54 | 39.38 |
| EER97956 | Sorghum | mitochondrion, nucleus | 50.96 | 37.32 |
| Bra040137.1-P | Field mustard | nucleus, plastid | 52.4 | 36.7 |
Protein Annotations
| MapMan:35.1 | EntrezGene:8072493 | InterPro:ALOG_dom | UniProt:C5XXT0 | ProteinID:EES07169.1 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009299 | GO:GO:0009416 | GO:GO:0009628 | GO:GO:0009987 | InterPro:IPR006936 |
| EnsemblPlants:KXG30661 | ProteinID:KXG30661 | ProteinID:KXG30661.1 | ProteinID:OQU85341.1 | PFAM:PF04852 | PFscan:PS51697 |
| PANTHER:PTHR31165 | PANTHER:PTHR31165:SF12 | EnsemblPlantsGene:SORBI_3004G219600 | UniParc:UPI0001A85F43 | RefSeq:XP_002454193.1 | SEG:seg |
Description
hypothetical protein
Coordinates
chr4:-:56908683..56915738
Molecular Weight (calculated)
21822.4 Da
IEP (calculated)
10.143
GRAVY (calculated)
-0.858
Length
208 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLSPNPESP GGGGDGGGGG GGAGGSSSGP SSSSAQGGGT PQTPSRYEAQ KRRDWNTFGQ YLRNHRPPLS LAQCSGAHVL EFLRYLDQFG KTKVHTAACP
101: FFGHPNPPAP CPCPLRQAWG SLDALVGRLR AAFEENGGRP ESNPFAARAV RLYLREVREH QARARGVSYE KKKRKKAQPP DHASGSGGQG PHHHHPPPPA
201: PPSAGAAC
101: FFGHPNPPAP CPCPLRQAWG SLDALVGRLR AAFEENGGRP ESNPFAARAV RLYLREVREH QARARGVSYE KKKRKKAQPP DHASGSGGQG PHHHHPPPPA
201: PPSAGAAC
001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
Arabidopsis Description
LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.