Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 4
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY05593 | Canola | nucleus, plastid | 95.26 | 94.76 |
| CDY52505 | Canola | nucleus, plastid | 94.74 | 94.24 |
| Bra020610.1-P | Field mustard | nucleus, plastid | 94.21 | 93.72 |
| CDY52479 | Canola | nucleus, plastid | 93.16 | 93.16 |
| CDY64755 | Canola | nucleus, plastid | 92.63 | 91.67 |
| CDY57024 | Canola | nucleus, plastid | 92.11 | 91.15 |
| CDX86199 | Canola | plastid | 91.58 | 90.62 |
| Bra036134.1-P | Field mustard | nucleus, plastid | 91.58 | 90.62 |
| Bra009997.1-P | Field mustard | plastid | 90.53 | 89.58 |
| AT3G04510.1 | Thale cress | nucleus, plastid | 82.63 | 78.11 |
| GSMUA_Achr11P... | Banana | nucleus | 36.32 | 73.4 |
| KRH34151 | Soybean | plastid | 64.21 | 69.32 |
| Zm00001d025863_P001 | Maize | nucleus | 60.0 | 67.86 |
| VIT_14s0036g00540.t01 | Wine grape | plastid | 66.32 | 65.97 |
| KRG97044 | Soybean | plastid | 63.16 | 65.57 |
| KRG92633 | Soybean | nucleus | 65.26 | 65.26 |
| KRH68792 | Soybean | plastid | 61.58 | 63.59 |
| AT3G23290.2 | Thale cress | plastid | 64.74 | 63.08 |
| PGSC0003DMT400060169 | Potato | nucleus, plastid | 68.95 | 62.68 |
| Solyc04g009980.2.1 | Tomato | nucleus, plastid | 58.42 | 61.67 |
| Solyc05g055020.2.1 | Tomato | nucleus | 68.42 | 61.61 |
| PGSC0003DMT400029945 | Potato | nucleus | 57.89 | 60.11 |
| EES11114 | Sorghum | nucleus | 62.11 | 59.3 |
| TraesCS6B01G256500.1 | Wheat | nucleus | 62.11 | 59.0 |
| Zm00001d003057_P001 | Maize | nucleus | 62.11 | 59.0 |
| GSMUA_Achr5P18640_001 | Banana | nucleus | 53.16 | 58.72 |
| TraesCS6A01G225000.1 | Wheat | nucleus | 62.11 | 58.42 |
| TraesCS6D01G209700.1 | Wheat | nucleus | 62.11 | 58.42 |
| HORVU2Hr1G089190.1 | Barley | nucleus | 61.05 | 58.29 |
| Os04t0516200-01 | Rice | nucleus | 61.58 | 57.92 |
| HORVU6Hr1G058340.2 | Barley | nucleus | 62.11 | 57.84 |
| TraesCS2D01G378900.1 | Wheat | nucleus | 61.05 | 57.71 |
| Zm00001d051143_P001 | Maize | nucleus | 61.05 | 57.43 |
| Zm00001d017263_P001 | Maize | nucleus | 61.58 | 57.35 |
| GSMUA_Achr5P03870_001 | Banana | nucleus | 52.11 | 57.23 |
| TraesCS2A01G382500.1 | Wheat | nucleus | 60.53 | 57.21 |
| TraesCS2B01G399800.1 | Wheat | nucleus | 60.53 | 57.21 |
| KXG30661 | Sorghum | nucleus | 62.63 | 57.21 |
| AT2G42610.1 | Thale cress | nucleus | 53.16 | 57.06 |
| Os10t0478000-01 | Rice | nucleus | 61.05 | 56.86 |
| GSMUA_Achr5P14570_001 | Banana | nucleus | 51.58 | 56.65 |
| GSMUA_Achr1P09270_001 | Banana | nucleus | 51.05 | 56.4 |
| TraesCS1B01G172100.1 | Wheat | nucleus | 61.05 | 56.31 |
| TraesCS1D01G153700.1 | Wheat | nucleus | 61.05 | 56.31 |
| Zm00001d014032_P001 | Maize | nucleus | 62.11 | 56.19 |
| GSMUA_Achr1P05650_001 | Banana | nucleus | 48.42 | 56.1 |
| Os02t0623400-00 | Rice | nucleus | 61.58 | 55.98 |
| GSMUA_Achr4P21940_001 | Banana | nucleus | 51.05 | 55.43 |
| Zm00001d032696_P001 | Maize | nucleus | 62.11 | 55.4 |
| AT2G31160.1 | Thale cress | nucleus | 63.68 | 55.25 |
| AT5G58500.1 | Thale cress | nucleus | 52.63 | 54.95 |
| GSMUA_AchrUn_... | Banana | nucleus | 44.21 | 54.55 |
| AT1G16910.1 | Thale cress | cytosol | 46.84 | 54.27 |
| AT1G07090.1 | Thale cress | nucleus | 54.74 | 53.06 |
| KXG38327 | Sorghum | nucleus | 62.11 | 52.91 |
| GSMUA_Achr6P36540_001 | Banana | nucleus | 44.21 | 52.17 |
| GSMUA_Achr4P28760_001 | Banana | nucleus | 50.0 | 51.91 |
| HORVU1Hr1G041240.5 | Barley | nucleus | 61.58 | 51.54 |
| AT1G78815.1 | Thale cress | nucleus | 51.05 | 49.74 |
| AT4G18610.1 | Thale cress | nucleus | 50.0 | 49.74 |
| Zm00001d051966_P001 | Maize | nucleus | 62.63 | 48.37 |
| TraesCS1A01G154900.1 | Wheat | nucleus | 61.05 | 48.13 |
| Zm00001d018433_P001 | Maize | nucleus | 62.11 | 47.77 |
| Os02t0811000-01 | Rice | nucleus | 62.11 | 47.58 |
| EES05986 | Sorghum | nucleus | 62.63 | 47.41 |
| TraesCS6A01G377300.1 | Wheat | nucleus | 62.63 | 47.22 |
| TraesCS6B01G414700.1 | Wheat | nucleus | 62.63 | 47.22 |
| TraesCS6D01G361900.1 | Wheat | nucleus | 62.63 | 47.22 |
| HORVU6Hr1G088790.1 | Barley | nucleus | 61.58 | 45.7 |
Protein Annotations
| MapMan:35.1 | EntrezGene:832941 | UniProt:A0A178UNT3 | ProteinID:AED93805.1 | EMBL:AF262039 | InterPro:ALOG_dom |
| ArrayExpress:AT5G28490 | EnsemblPlantsGene:AT5G28490 | RefSeq:AT5G28490 | TAIR:AT5G28490 | RefSeq:AT5G28490-TAIR-G | EnsemblPlants:AT5G28490.1 |
| TAIR:AT5G28490.1 | EMBL:AY319947 | EMBL:BT010821 | EMBL:BT011304 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009299 | GO:GO:0009416 | GO:GO:0009628 | GO:GO:0009637 | GO:GO:0009653 |
| GO:GO:0009826 | GO:GO:0009987 | GO:GO:0010114 | GO:GO:0010218 | GO:GO:0016043 | GO:GO:0016049 |
| GO:GO:0040007 | GO:GO:0090698 | InterPro:IPR006936 | Symbol:LSH1 | RefSeq:NP_198201.1 | ProteinID:OAO95499.1 |
| PFAM:PF04852 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0004507 | PO:PO:0007131 |
| PO:PO:0007611 | PO:PO:0009009 | PO:PO:0009025 | PO:PO:0009046 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PFscan:PS51697 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF16 | UniProt:Q6NNI3 | UniParc:UPI0000162648 |
| SEG:seg | : | : | : | : | : |
Description
LSH1Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 [Source:UniProtKB/Swiss-Prot;Acc:Q6NNI3]
Coordinates
chr5:-:10454388..10455681
Molecular Weight (calculated)
21654.7 Da
IEP (calculated)
10.575
GRAVY (calculated)
-0.945
Length
190 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLISHQPNK NPNSSTQLTP PSSSRYENQK RRDWNTFCQY LRNHRPPLSL PSCSGAHVLE FLRYLDQFGK TKVHHQNCAF FGLPNPPAPC PCPLRQAWGS
101: LDALIGRLRA AYEENGGPPE ANPFGSRAVR LFLREVRDFQ AKARGVSYEK KRKRVNRQKP QTQPPLQLQQ QQQQPQQGQS MMANYSGATV
101: LDALIGRLRA AYEENGGPPE ANPFGSRAVR LFLREVRDFQ AKARGVSYEK KRKRVNRQKP QTQPPLQLQQ QQQQPQQGQS MMANYSGATV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.