Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G78815.1 | Thale cress | nucleus | 74.39 | 62.56 |
| AT2G42610.1 | Thale cress | nucleus | 60.37 | 55.93 |
| KRH27347 | Soybean | nucleus | 62.2 | 55.43 |
| KRH21973 | Soybean | nucleus | 62.8 | 53.09 |
| PGSC0003DMT400039811 | Potato | nucleus | 62.8 | 50.24 |
| Solyc12g014260.1.1 | Tomato | nucleus | 62.8 | 50.24 |
| VIT_19s0014g01350.t01 | Wine grape | nucleus | 66.46 | 49.55 |
| AT4G18610.1 | Thale cress | nucleus | 57.32 | 49.21 |
| AT5G58500.1 | Thale cress | nucleus | 53.05 | 47.8 |
| AT5G28490.1 | Thale cress | nucleus, plastid | 54.27 | 46.84 |
| AT1G07090.1 | Thale cress | nucleus | 53.05 | 44.39 |
| AT3G04510.1 | Thale cress | nucleus, plastid | 54.27 | 44.28 |
| AT3G23290.2 | Thale cress | plastid | 52.44 | 44.1 |
| AT2G31160.1 | Thale cress | nucleus | 51.83 | 38.81 |
Protein Annotations
| MapMan:35.1 | EntrezGene:838262 | ProteinID:AAF99841.1 | ProteinID:AEE29520.1 | InterPro:ALOG_dom | ArrayExpress:AT1G16910 |
| EnsemblPlantsGene:AT1G16910 | RefSeq:AT1G16910 | TAIR:AT1G16910 | RefSeq:AT1G16910-TAIR-G | EnsemblPlants:AT1G16910.1 | TAIR:AT1G16910.1 |
| EMBL:AY800583 | Unigene:At.51174 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009299 |
| GO:GO:0009416 | GO:GO:0009628 | GO:GO:0009653 | GO:GO:0009987 | GO:GO:0090698 | InterPro:IPR006936 |
| Symbol:LSH8 | RefSeq:NP_173135.1 | PFAM:PF04852 | PO:PO:0007611 | PO:PO:0009046 | PFscan:PS51697 |
| PANTHER:PTHR31165 | PANTHER:PTHR31165:SF37 | UniProt:Q9FZ51 | UniParc:UPI00000A6393 | SEG:seg | : |
Description
LSH8Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ51]
Coordinates
chr1:+:5785003..5785959
Molecular Weight (calculated)
18525.3 Da
IEP (calculated)
10.205
GRAVY (calculated)
-0.598
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSTNTRNKG KCIVEGPPPT LSRYESQKSR DWNTFCQYLM TKMPPVHVWE CESNHILDFL QSRDQFGKTK VHIQGCVFFG QKEPPGECNC PLKQAWGSLD
101: ALIGRLRAAY EENGGLTEKN PFARGGIRIF LREVRGSQAK ARGVLYKKKK RLVVVGTGTS TTWT
101: ALIGRLRAAY EENGGLTEKN PFARGGIRIF LREVRGSQAK ARGVLYKKKK RLVVVGTGTS TTWT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.