Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000269.1-P | Field mustard | nucleus | 95.48 | 95.48 |
| CDY47983 | Canola | nucleus | 92.66 | 93.18 |
| Bra016865.1-P | Field mustard | nucleus | 92.66 | 93.18 |
| Bra004711.1-P | Field mustard | nucleus | 87.57 | 92.81 |
| CDY55387 | Canola | nucleus | 93.22 | 92.7 |
| CDY14848 | Canola | nucleus | 92.09 | 92.09 |
| VIT_12s0028g02160.t01 | Wine grape | nucleus | 77.97 | 82.63 |
| KRH27046 | Soybean | nucleus | 77.97 | 78.86 |
| PGSC0003DMT400052658 | Potato | nucleus | 76.84 | 78.61 |
| KRH55744 | Soybean | nucleus | 77.97 | 77.09 |
| KRH25774 | Soybean | nucleus | 76.27 | 76.27 |
| KRH22284 | Soybean | nucleus | 68.36 | 75.62 |
| PGSC0003DMT400027334 | Potato | nucleus | 72.32 | 71.91 |
| Solyc10g008000.1.1 | Tomato | nucleus | 72.32 | 71.91 |
| AT1G16910.1 | Thale cress | cytosol | 55.93 | 60.37 |
| AT4G18610.1 | Thale cress | nucleus | 64.97 | 60.21 |
| AT1G78815.1 | Thale cress | nucleus | 61.02 | 55.38 |
| AT5G58500.1 | Thale cress | nucleus | 55.37 | 53.85 |
| AT5G28490.1 | Thale cress | nucleus, plastid | 57.06 | 53.16 |
| AT3G23290.2 | Thale cress | plastid | 58.19 | 52.82 |
| AT1G07090.1 | Thale cress | nucleus | 57.63 | 52.04 |
| AT3G04510.1 | Thale cress | nucleus, plastid | 54.8 | 48.26 |
| AT2G31160.1 | Thale cress | nucleus | 58.76 | 47.49 |
Protein Annotations
| MapMan:35.1 | EntrezGene:818861 | UniProt:A0A178VLX9 | ProteinID:AAD22993.1 | ProteinID:ABQ85148.1 | ProteinID:ABQ85149.1 |
| ProteinID:ABQ85150.1 | ProteinID:ABQ85151.1 | ProteinID:ABQ85152.1 | ProteinID:ABQ85153.1 | ProteinID:ABQ85154.1 | ProteinID:ABQ85155.1 |
| ProteinID:ABQ85156.1 | ProteinID:ABQ85157.1 | ProteinID:ABQ85158.1 | ProteinID:ABQ85159.1 | ProteinID:ABQ85160.1 | ProteinID:ABQ85161.1 |
| ProteinID:ABQ85162.1 | ProteinID:ABQ85163.1 | ProteinID:ABQ85164.1 | ProteinID:ABQ85165.1 | ProteinID:ABQ85166.1 | ProteinID:ABQ85167.1 |
| ProteinID:ABQ85168.1 | ProteinID:ABQ85169.1 | ProteinID:ABQ85170.1 | ProteinID:ABQ85171.1 | ProteinID:AEC10147.1 | ProteinID:AEC10148.1 |
| EMBL:AF218765 | EMBL:AK118714 | EMBL:AK119048 | InterPro:ALOG_dom | ArrayExpress:AT2G42610 | EnsemblPlantsGene:AT2G42610 |
| RefSeq:AT2G42610 | TAIR:AT2G42610 | RefSeq:AT2G42610-TAIR-G | EnsemblPlants:AT2G42610.1 | TAIR:AT2G42610.1 | EMBL:BT003740 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009299 | GO:GO:0009416 | GO:GO:0009628 |
| GO:GO:0009653 | GO:GO:0009987 | GO:GO:0090698 | InterPro:IPR006936 | Symbol:LSH10 | RefSeq:NP_565978.1 |
| RefSeq:NP_850374.1 | ProteinID:OAP07339.1 | PFAM:PF04852 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PFscan:PS51697 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF10 | UniProt:Q9S7R3 | UniParc:UPI000000C138 | SEG:seg |
Description
LSH10LSH10 [Source:UniProtKB/TrEMBL;Acc:A0A178VLX9]
Coordinates
chr2:+:17747781..17750524
Molecular Weight (calculated)
19792.5 Da
IEP (calculated)
9.911
GRAVY (calculated)
-0.884
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSPRERGKS LMESSGSEPP VTPSRYESQK RRDWNTFGQY LKNQRPPVPM SHCSCNHVLD FLRYLDQFGK TKVHVPGCMF YGQPEPPAPC TCPLRQAWGS
101: LDALIGRLRA AYEENGGPPE TNPFASGAIR VYLREVRECQ AKARGIPYKK KKKKKPTPEM GGGREDSSSS SSSFSFS
101: LDALIGRLRA AYEENGGPPE TNPFASGAIR VYLREVRECQ AKARGIPYKK KKKKKPTPEM GGGREDSSSS SSSFSFS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.