Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016865.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY14848 | Canola | nucleus | 98.86 | 98.31 |
| AT2G42610.1 | Thale cress | nucleus | 93.18 | 92.66 |
| CDY55387 | Canola | nucleus | 90.91 | 89.89 |
| VIT_12s0028g02160.t01 | Wine grape | nucleus | 76.7 | 80.84 |
| KRH27046 | Soybean | nucleus | 78.41 | 78.86 |
| PGSC0003DMT400052658 | Potato | nucleus | 76.14 | 77.46 |
| KRH55744 | Soybean | nucleus | 77.84 | 76.54 |
| KRH25774 | Soybean | nucleus | 76.14 | 75.71 |
| KRH22284 | Soybean | nucleus | 67.61 | 74.38 |
| PGSC0003DMT400027334 | Potato | nucleus | 73.86 | 73.03 |
| Solyc10g008000.1.1 | Tomato | nucleus | 72.73 | 71.91 |
| CDY01557 | Canola | nucleus | 64.77 | 59.69 |
| CDY67351 | Canola | nucleus | 65.34 | 59.59 |
| CDX88480 | Canola | nucleus | 62.5 | 59.46 |
| CDX78877 | Canola | nucleus | 65.91 | 59.18 |
| CDX76510 | Canola | nucleus | 64.77 | 59.07 |
| CDY34056 | Canola | nucleus | 64.77 | 59.07 |
| CDX87760 | Canola | nucleus | 59.66 | 58.33 |
| CDY10712 | Canola | cytosol, nucleus, plastid | 53.98 | 57.58 |
| CDY06030 | Canola | nucleus | 59.09 | 57.46 |
| CDX87432 | Canola | nucleus | 61.93 | 57.37 |
| CDY32697 | Canola | nucleus | 57.39 | 57.06 |
| CDY02038 | Canola | cytosol | 52.84 | 56.71 |
| CDY59510 | Canola | nucleus | 57.39 | 55.8 |
| CDY14588 | Canola | nucleus | 60.23 | 55.79 |
| CDY26881 | Canola | nucleus | 60.23 | 55.5 |
| CDY32977 | Canola | nucleus, plastid | 56.82 | 54.64 |
| CDY61050 | Canola | nucleus | 56.82 | 54.64 |
| CDX77619 | Canola | cytosol | 30.11 | 54.08 |
| CDY69731 | Canola | plastid | 59.66 | 53.85 |
| CDY35523 | Canola | plastid | 59.09 | 53.33 |
| CDX85083 | Canola | plastid | 59.66 | 52.76 |
| CDX77531 | Canola | plastid | 59.66 | 52.76 |
| CDY52479 | Canola | nucleus, plastid | 56.25 | 52.11 |
| CDX86199 | Canola | plastid | 56.82 | 52.08 |
| CDY57024 | Canola | nucleus, plastid | 56.25 | 51.56 |
| CDY10247 | Canola | nucleus, plastid | 57.95 | 51.52 |
| CDY06675 | Canola | nucleus, plastid | 57.95 | 51.52 |
| CDY21126 | Canola | nucleus, plastid | 54.55 | 50.53 |
| CDY64755 | Canola | nucleus, plastid | 55.11 | 50.52 |
| CDY59064 | Canola | nucleus | 56.82 | 50.51 |
| CDY52505 | Canola | nucleus, plastid | 54.55 | 50.26 |
| CDY05593 | Canola | nucleus, plastid | 54.55 | 50.26 |
| CDX94980 | Canola | nucleus | 56.25 | 50.0 |
| CDY52287 | Canola | nucleus | 56.25 | 50.0 |
| CDY09940 | Canola | nucleus | 56.25 | 50.0 |
| CDY20312 | Canola | nucleus | 56.25 | 50.0 |
| CDY30000 | Canola | nucleus, plastid | 53.98 | 50.0 |
| CDY63294 | Canola | nucleus | 51.7 | 49.46 |
| CDX74186 | Canola | nucleus, plastid | 52.84 | 48.95 |
| CDY49331 | Canola | nucleus, plastid | 53.41 | 47.96 |
| CDY24755 | Canola | nucleus, plastid | 58.52 | 47.91 |
| CDY10790 | Canola | nucleus | 58.52 | 47.91 |
| CDY42932 | Canola | nucleus, plastid | 53.41 | 47.72 |
| CDY57088 | Canola | nucleus | 58.52 | 47.47 |
| CDY57087 | Canola | nucleus | 58.52 | 47.47 |
| CDY15426 | Canola | nucleus | 58.52 | 47.47 |
| CDY32978 | Canola | cytosol, nucleus, plastid | 50.0 | 47.06 |
Protein Annotations
| EnsemblPlants:CDY47983 | EnsemblPlantsGene:GSBRNA2T00088611001 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF10 |
| PFAM:PF04852 | PFscan:PS51697 | ProteinID:CDY47983 | ProteinID:CDY47983.1 | SEG:seg | UniParc:UPI0002543AAF |
| UniProt:A0A078IFN6 | MapMan:35.1 | : | : | : | : |
Description
BnaA04g24610DBnaA04g24610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IFN6]
Coordinates
chrLK032747:+:95397..97790
Molecular Weight (calculated)
19740.3 Da
IEP (calculated)
9.771
GRAVY (calculated)
-0.865
Length
176 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSPGDRGKN FMESSGSEPP VTPSRYESQK RRDWNTFGQY LKNQRPPVPM SHCSCNHVLD FLRYLDQFGK TKVHVFGCMF YGQPEPPAPC TCPLRQAWGS
101: LDALIGRLRA AYEENGGSPE TNPFATGAIR VYLREVRECQ AKARGIPYKK KKKKPKTEMS GGRDDSSSSS SSFNFS
101: LDALIGRLRA AYEENGGSPE TNPFATGAIR VYLREVRECQ AKARGIPYKK KKKKPKTEMS GGRDDSSSSS SSFNFS
001: MSSPRERGKS LMESSGSEPP VTPSRYESQK RRDWNTFGQY LKNQRPPVPM SHCSCNHVLD FLRYLDQFGK TKVHVPGCMF YGQPEPPAPC TCPLRQAWGS
101: LDALIGRLRA AYEENGGPPE TNPFASGAIR VYLREVRECQ AKARGIPYKK KKKKKPTPEM GGGREDSSSS SSSFSFS
101: LDALIGRLRA AYEENGGPPE TNPFASGAIR VYLREVRECQ AKARGIPYKK KKKKKPTPEM GGGREDSSSS SSSFSFS
Arabidopsis Description
LSH10LSH10 [Source:UniProtKB/TrEMBL;Acc:A0A178VLX9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.