Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY10712 | Canola | cytosol, nucleus, plastid | 92.07 | 91.52 |
| CDY10247 | Canola | nucleus, plastid | 73.78 | 61.11 |
| CDY06675 | Canola | nucleus, plastid | 73.78 | 61.11 |
| CDY59064 | Canola | nucleus | 71.34 | 59.09 |
| CDY09940 | Canola | nucleus | 71.34 | 59.09 |
| CDY20312 | Canola | nucleus | 71.34 | 59.09 |
| CDX94980 | Canola | nucleus | 71.34 | 59.09 |
| CDY52287 | Canola | nucleus | 71.34 | 59.09 |
| CDY32697 | Canola | nucleus | 60.37 | 55.93 |
| CDY32977 | Canola | nucleus, plastid | 61.59 | 55.19 |
| CDY61050 | Canola | nucleus | 61.59 | 55.19 |
| CDY59510 | Canola | nucleus | 60.37 | 54.7 |
| CDY35523 | Canola | plastid | 64.02 | 53.85 |
| CDY69731 | Canola | plastid | 63.41 | 53.33 |
| CDY47983 | Canola | nucleus | 56.71 | 52.84 |
| CDX86199 | Canola | plastid | 61.59 | 52.6 |
| CDY14848 | Canola | nucleus | 56.71 | 52.54 |
| CDX77531 | Canola | plastid | 63.41 | 52.26 |
| CDX85083 | Canola | plastid | 63.41 | 52.26 |
| CDY52479 | Canola | nucleus, plastid | 60.37 | 52.11 |
| CDY55387 | Canola | nucleus | 56.1 | 51.69 |
| CDY64755 | Canola | nucleus, plastid | 60.37 | 51.56 |
| CDY57024 | Canola | nucleus, plastid | 59.76 | 51.04 |
| OQU83235 | Sorghum | cytosol | 54.27 | 50.57 |
| CDY05593 | Canola | nucleus, plastid | 58.54 | 50.26 |
| CDY52505 | Canola | nucleus, plastid | 58.54 | 50.26 |
| CDY63294 | Canola | nucleus | 56.1 | 50.0 |
| CDX77619 | Canola | cytosol | 29.88 | 50.0 |
| CDY06030 | Canola | nucleus | 54.88 | 49.72 |
| CDX74186 | Canola | nucleus, plastid | 57.32 | 49.47 |
| CDX87760 | Canola | nucleus | 54.27 | 49.44 |
| CDY67351 | Canola | nucleus | 57.93 | 49.22 |
| CDY01557 | Canola | nucleus | 57.32 | 49.21 |
| CDX88480 | Canola | nucleus | 55.49 | 49.19 |
| CDX76510 | Canola | nucleus | 57.32 | 48.7 |
| CDX78877 | Canola | nucleus | 57.93 | 48.47 |
| CDY49331 | Canola | nucleus, plastid | 57.93 | 48.47 |
| CDY30000 | Canola | nucleus, plastid | 56.1 | 48.42 |
| CDY21126 | Canola | nucleus, plastid | 56.1 | 48.42 |
| CDY42932 | Canola | nucleus, plastid | 57.93 | 48.22 |
| CDY34056 | Canola | nucleus | 56.71 | 48.19 |
| CDX87432 | Canola | nucleus | 55.49 | 47.89 |
| CDY14588 | Canola | nucleus | 53.66 | 46.32 |
| CDY26881 | Canola | nucleus | 53.66 | 46.07 |
| CDY24755 | Canola | nucleus, plastid | 60.37 | 46.05 |
| CDY10790 | Canola | nucleus | 60.37 | 46.05 |
| CDY57087 | Canola | nucleus | 60.37 | 45.62 |
| CDY15426 | Canola | nucleus | 60.37 | 45.62 |
| CDY57088 | Canola | nucleus | 60.37 | 45.62 |
| CDY32978 | Canola | cytosol, nucleus, plastid | 51.83 | 45.45 |
| GSMUA_Achr10P... | Banana | nucleus | 54.27 | 43.63 |
| GSMUA_Achr8P01890_001 | Banana | nucleus | 52.44 | 42.36 |
| TraesCS1B01G235800.1 | Wheat | nucleus | 65.24 | 37.81 |
| TraesCS1A01G222500.1 | Wheat | nucleus | 65.24 | 37.68 |
| TraesCS1D01G224100.1 | Wheat | nucleus | 65.24 | 37.68 |
| HORVU1Hr1G060250.1 | Barley | nucleus | 65.24 | 37.41 |
| Os05t0347400-01 | Rice | nucleus | 64.02 | 36.97 |
| Zm00001d038016_P001 | Maize | extracellular | 62.8 | 34.22 |
| Zm00001d010507_P001 | Maize | nucleus, plastid | 62.8 | 32.59 |
| EES19345 | Sorghum | nucleus, plastid | 62.8 | 31.69 |
Protein Annotations
| EnsemblPlants:CDY02038 | EnsemblPlantsGene:GSBRNA2T00113382001 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF6 |
| PFAM:PF04852 | PFscan:PS51697 | ProteinID:CDY02038 | ProteinID:CDY02038.1 | SEG:seg | UniParc:UPI0004EE48B3 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaC04g14630D
Coordinates
chrLK031931:+:672827..673321
Molecular Weight (calculated)
18486.1 Da
IEP (calculated)
10.307
GRAVY (calculated)
-0.632
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPATWSCRP DPKPSTASAP PPSRYESQKR RDWNTFLQYL RHHKPPLALT LCSGAHVLEF LKYLDQFGKT KVHVTTCFFF GHSDPTSPCA CPHKQAWGSL
101: DSLIGRLRAA FEENGGRPDT NPFAARAIRM YLREVKGSQA KARGITYQKK RPKAAVTTVR LDVD
101: DSLIGRLRAA FEENGGRPDT NPFAARAIRM YLREVKGSQA KARGITYQKK RPKAAVTTVR LDVD
001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
Arabidopsis Description
LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.