Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- nucleus 2
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d038016_P001 | Maize | extracellular | 80.7 | 84.72 |
| EES19345 | Sorghum | nucleus, plastid | 86.08 | 83.69 |
| OQU83235 | Sorghum | cytosol | 41.14 | 73.86 |
| TraesCS1D01G224100.1 | Wheat | nucleus | 65.82 | 73.24 |
| TraesCS1B01G235800.1 | Wheat | nucleus | 65.51 | 73.14 |
| TraesCS1A01G222500.1 | Wheat | nucleus | 65.19 | 72.54 |
| HORVU1Hr1G060250.1 | Barley | nucleus | 63.92 | 70.63 |
| Zm00001d025863_P001 | Maize | nucleus | 36.08 | 67.86 |
| Os05t0347400-01 | Rice | nucleus | 60.76 | 67.61 |
| Bra018337.1-P | Field mustard | cytosol | 35.13 | 67.27 |
| CDY10712 | Canola | cytosol, nucleus, plastid | 34.81 | 66.67 |
| CDY32697 | Canola | nucleus | 36.71 | 65.54 |
| Bra020365.1-P | Field mustard | nucleus | 37.34 | 65.19 |
| CDY59510 | Canola | nucleus | 37.34 | 65.19 |
| Zm00001d043011_P001 | Maize | nucleus | 43.04 | 65.07 |
| CDY32977 | Canola | nucleus, plastid | 37.66 | 65.03 |
| Bra002642.1-P | Field mustard | nucleus, plastid | 37.34 | 64.48 |
| AT1G07090.1 | Thale cress | nucleus | 39.87 | 64.29 |
| AT5G58500.1 | Thale cress | nucleus | 36.71 | 63.74 |
| CDY10247 | Canola | nucleus, plastid | 39.56 | 63.13 |
| CDY06675 | Canola | nucleus, plastid | 39.56 | 63.13 |
| CDY02038 | Canola | cytosol | 32.59 | 62.8 |
| CDY59064 | Canola | nucleus | 39.24 | 62.63 |
| Bra015551.1-P | Field mustard | nucleus, plastid | 39.24 | 62.63 |
| Zm00001d012473_P001 | Maize | nucleus | 41.14 | 62.5 |
| KRH17088 | Soybean | nucleus | 43.04 | 62.39 |
| CDY61050 | Canola | nucleus | 36.08 | 62.3 |
| Bra031552.1-P | Field mustard | nucleus | 38.92 | 62.12 |
| CDY52287 | Canola | nucleus | 38.61 | 61.62 |
| CDX94980 | Canola | nucleus | 38.61 | 61.62 |
| CDY09940 | Canola | nucleus | 38.61 | 61.62 |
| CDY20312 | Canola | nucleus | 38.61 | 61.62 |
| Zm00001d017263_P001 | Maize | nucleus | 38.92 | 60.29 |
| KRH72732 | Soybean | nucleus | 41.77 | 60.27 |
| Zm00001d003057_P001 | Maize | nucleus | 37.97 | 60.0 |
| KRG98226 | Soybean | nucleus | 43.99 | 59.91 |
| VIT_06s0004g07090.t01 | Wine grape | nucleus | 43.67 | 59.74 |
| Zm00001d051143_P001 | Maize | nucleus | 37.97 | 59.41 |
| PGSC0003DMT400078091 | Potato | nucleus | 41.77 | 59.19 |
| Zm00001d038442_P001 | Maize | nucleus | 46.2 | 59.11 |
| GSMUA_Achr5P07420_001 | Banana | nucleus | 39.56 | 58.96 |
| Solyc06g082210.1.1 | Tomato | nucleus | 41.14 | 58.56 |
| Zm00001d010596_P001 | Maize | nucleus | 44.62 | 57.09 |
| KRH30185 | Soybean | nucleus | 41.77 | 56.17 |
| Zm00001d014032_P001 | Maize | nucleus | 37.03 | 55.71 |
| Zm00001d032696_P001 | Maize | nucleus | 37.34 | 55.4 |
| Bra002644.1-P | Field mustard | cytosol, nucleus, plastid | 32.28 | 54.55 |
| CDY32978 | Canola | cytosol, nucleus, plastid | 31.33 | 52.94 |
| Zm00001d018433_P001 | Maize | nucleus | 39.24 | 50.2 |
| Zm00001d051966_P001 | Maize | nucleus | 38.92 | 50.0 |
| Zm00001d015342_P001 | Maize | nucleus | 37.66 | 48.18 |
| Zm00001d046998_P001 | Maize | nucleus | 38.61 | 44.04 |
| Zm00001d036617_P001 | Maize | nucleus | 37.66 | 42.96 |
| GSMUA_Achr9P18050_001 | Banana | nucleus | 35.13 | 39.08 |
| Zm00001d018775_P001 | Maize | nucleus | 31.01 | 38.28 |
| Zm00001d036993_P001 | Maize | mitochondrion | 15.82 | 28.9 |
| Zm00001d020559_P001 | Maize | mitochondrion | 6.65 | 10.24 |
Protein Annotations
| EnsemblPlants:Zm00001d010507_P001 | EnsemblPlants:Zm00001d010507_T001 | EnsemblPlantsGene:Zm00001d010507 | EntrezGene:103635755 | InterPro:ALOG_dom | InterPro:IPR006936 |
| PANTHER:PTHR31165 | PANTHER:PTHR31165:SF6 | PFAM:PF04852 | PFscan:PS51697 | ProteinID:AQK94201.1 | SEG:seg |
| UniParc:UPI000221613A | UniProt:K7VGF5 | MapMan:35.1 | : | : | : |
Description
Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5
Coordinates
chr8:-:118419214..118420164
Molecular Weight (calculated)
32866.7 Da
IEP (calculated)
8.967
GRAVY (calculated)
-0.840
Length
316 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPGPDGPAG GQGTSAPAEA GPSPSSSSAA AAASSSSRKQ AEQQAPPQQQ AGAQQRQQQA ARAQHQEAPA PQAAQAQPQP LAQQPPPPPP PAGLSRYESQ
101: KRRDWNTFLQ YLRNHKPPLT LARCSGAHVI EFLRYLDQFG KTKVHTEGCA HFGQPNPPAP CACPLRQAWG SLDALIGRLR AAYEESGGRP ESNPFAAKAV
201: RIYLRDVREA QAKARGIPYE KRKRKRGSAA AAPPVAPPPV VTAETAGTTS GTVCDEEEEP SPSAGDEPQK QTTTPTSASA PPTSTSSASA SSSSAAAATT
301: STTTTRKEEE GSAPSS
101: KRRDWNTFLQ YLRNHKPPLT LARCSGAHVI EFLRYLDQFG KTKVHTEGCA HFGQPNPPAP CACPLRQAWG SLDALIGRLR AAYEESGGRP ESNPFAAKAV
201: RIYLRDVREA QAKARGIPYE KRKRKRGSAA AAPPVAPPPV VTAETAGTTS GTVCDEEEEP SPSAGDEPQK QTTTPTSASA PPTSTSSASA SSSSAAAATT
301: STTTTRKEEE GSAPSS
001: MEGETAAKAA ASSSSSPSRY ESQKRRDWNT FLQYLRNHKP PLNLSRCSGA HVLEFLKYLD QFGKTKVHAT ACPFFGQPNP PSQCTCPLKQ AWGSLDALIG
101: RLRAAFEEIG GGLPESNPFA AKAVRIYLKE VRQTQAKARG IPYDKKKRKR PHTDTATPIA GDGDDAEGSG GAALVVTAAT TV
101: RLRAAFEEIG GGLPESNPFA AKAVRIYLKE VRQTQAKARG IPYDKKKRKR PHTDTATPIA GDGDDAEGSG GAALVVTAAT TV
Arabidopsis Description
LSH5LSH5 [Source:UniProtKB/TrEMBL;Acc:A0A178U8N9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.