Factsheet for Zm00001d020559_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
mitochondrion 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, secretory
iPSORT:	secretory
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d036993_P001	Maize	mitochondrion	40.49	47.98
TraesCS3A01G348900.1	Wheat	golgi	11.22	10.85
TraesCS3B01G381000.1	Wheat	cytosol, nucleus, plastid	11.22	10.85
Zm00001d043011_P001	Maize	nucleus	10.73	10.53
Zm00001d051143_P001	Maize	nucleus	10.24	10.4
Zm00001d017263_P001	Maize	nucleus	10.24	10.29
OQU87784	Sorghum	nucleus	10.73	10.23
Zm00001d025863_P001	Maize	nucleus	8.29	10.12
Zm00001d012473_P001	Maize	nucleus	10.24	10.1
Zm00001d003057_P001	Maize	nucleus	9.76	10.0
TraesCS3D01G342800.1	Wheat	cytosol, nucleus, plastid	10.24	9.91
Zm00001d032696_P001	Maize	nucleus	10.24	9.86
Zm00001d014032_P001	Maize	nucleus	9.76	9.52
Os01t0828900-00	Rice	nucleus, plastid	9.76	9.43
Zm00001d038442_P001	Maize	nucleus	11.22	9.31
HORVU3Hr1G088000.2	Barley	plastid	10.24	9.17
GSMUA_Achr11P...	Banana	nucleus	7.8	9.09
Zm00001d051966_P001	Maize	nucleus	10.73	8.94
Zm00001d018433_P001	Maize	nucleus	10.73	8.91
Zm00001d015342_P001	Maize	nucleus	10.73	8.91
Zm00001d010596_P001	Maize	nucleus	10.73	8.91
GSMUA_AchrUn_...	Banana	nucleus	7.8	8.6
Zm00001d036617_P001	Maize	nucleus	10.73	7.94
Zm00001d046998_P001	Maize	nucleus	10.24	7.58
GSMUA_Achr11P...	Banana	nucleus	7.32	7.39
Zm00001d038016_P001	Maize	extracellular	10.73	7.31
Zm00001d018775_P001	Maize	nucleus	8.78	7.03
GSMUA_Achr7P22390_001	Banana	endoplasmic reticulum, nucleus	6.83	6.76
Zm00001d010507_P001	Maize	nucleus, plastid	10.24	6.65

Protein Annotations

Gene3D:3.30.2350.10	MapMan:35.2	UniProt:A0A1D6I4Q5	GO:GO:0001522	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009451	GO:GO:0009982	GO:GO:0009987	ProteinID:ONM55121.1	PANTHER:PTHR44799	InterPro:PsdUridine_synth_cat_dom_sf
InterPro:RBD_domain_sf	SUPFAM:SSF54928	SUPFAM:SSF55120	SignalP:SignalP-noTM	UniParc:UPI000220A359	EnsemblPlantsGene:Zm00001d020559
EnsemblPlants:Zm00001d020559_P001	EnsemblPlants:Zm00001d020559_T001	:	:	:	:

Description

Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5

Coordinates

chr7:-:122250127..122254011

Molecular Weight (calculated)

23098.2 Da

IEP (calculated)

10.016

GRAVY (calculated)

-0.077

Length

205 amino acids

Sequence
(BLAST)

001: MRQRWCRIGL GCRSGDAVIL LHVCPISVLY DTDWSAIDVS YPSLAPTPRM VLATTKMTQS QLLRAGWRTT KTPSRLLEVV AHVYKTINAI PVDAHHMAQF
101: ITWTSTIRLN VNILFLLSKI MRDSKTGNSI VHESFELSDQ AVKAMNNQHF CNHPIIVSYA YKKGTKGDTM AHQQVEIHLG QPHQIRIHLA YNGHPLVVKP
201: IAHST

Best Arabidopsis Sequence Match ( AT2G18510.1 )
(BLAST)

001: MTTRIAPGVG ANLLGQHSAE RNQDATVYVG GLDAQLSEEL LWELFVQAGP VVNVYVPKDR VTNLHQNYGF IEYRSEEDAD YAIKVLNMIK LHGKPIRVNK
101: ASQDKKSLDV GANLFIGNLD PDVDEKLLYD TFSAFGVIAS NPKIMRDPDT GNSRGFGFIS YDSFEASDAA IESMTGQYLS NRQITVSYAY KKDTKGERHG
201: TPAERLLAAT NPTAQKSRPH TLFAMGPPSS APQVNGLPRP FANGSMQPVP IPAPRQPPPP PPQVYQTQPP SWPSQPQQHS MVPPPMQFRP PQGMPPPPPP
301: QFLNHQQGFG GPRPPPPPQA MGMHQHGGWP PQHMQQQGGP PQQQQPPYQH HHMSMPPPPP HQG

Arabidopsis Description

emb2444Emb2444 [Source:UniProtKB/TrEMBL;Acc:A0A178VZK5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.