Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d038442_P001 | Maize | nucleus | 80.57 | 80.57 |
| Zm00001d043011_P001 | Maize | nucleus | 64.37 | 76.08 |
| Zm00001d012473_P001 | Maize | nucleus | 63.16 | 75.0 |
| TraesCS1D01G294600.2 | Wheat | nucleus, plastid | 67.61 | 71.67 |
| HORVU1Hr1G070480.1 | Barley | nucleus | 66.8 | 71.12 |
| TraesCS1B01G305800.1 | Wheat | nucleus | 67.21 | 69.75 |
| Os05t0472000-00 | Rice | nucleus | 65.99 | 68.49 |
| TraesCS1A01G296900.1 | Wheat | nucleus, plastid | 66.8 | 67.62 |
| Zm00001d025863_P001 | Maize | nucleus | 42.51 | 62.5 |
| GSMUA_Achr11P... | Banana | nucleus | 43.72 | 61.36 |
| GSMUA_AchrUn_... | Banana | nucleus | 46.15 | 61.29 |
| Zm00001d017263_P001 | Maize | nucleus | 46.56 | 56.37 |
| Zm00001d003057_P001 | Maize | nucleus | 45.34 | 56.0 |
| Zm00001d051143_P001 | Maize | nucleus | 45.75 | 55.94 |
| Zm00001d014032_P001 | Maize | nucleus | 47.37 | 55.71 |
| Zm00001d032696_P001 | Maize | nucleus | 47.37 | 54.93 |
| GSMUA_Achr7P22390_001 | Banana | endoplasmic reticulum, nucleus | 44.13 | 52.66 |
| Zm00001d018433_P001 | Maize | nucleus | 48.99 | 48.99 |
| Zm00001d051966_P001 | Maize | nucleus | 48.18 | 48.37 |
| GSMUA_Achr11P... | Banana | nucleus | 39.68 | 48.28 |
| Zm00001d038016_P001 | Maize | extracellular | 57.89 | 47.51 |
| Zm00001d015342_P001 | Maize | nucleus | 46.56 | 46.56 |
| Zm00001d010507_P001 | Maize | nucleus, plastid | 57.09 | 44.62 |
| Zm00001d036617_P001 | Maize | nucleus | 48.18 | 42.96 |
| Zm00001d046998_P001 | Maize | nucleus | 48.18 | 42.96 |
| Zm00001d018775_P001 | Maize | nucleus | 40.08 | 38.67 |
| Zm00001d036993_P001 | Maize | mitochondrion | 20.65 | 29.48 |
| Zm00001d020559_P001 | Maize | mitochondrion | 8.91 | 10.73 |
Protein Annotations
| EnsemblPlants:Zm00001d010596_P001 | EnsemblPlants:Zm00001d010596_T001 | EnsemblPlantsGene:Zm00001d010596 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 |
| PANTHER:PTHR31165:SF18 | PFAM:PF04852 | PFscan:PS51697 | ProteinID:AQK94427.1 | SEG:seg | UniParc:UPI000221F5D0 |
| UniProt:K7V0N6 | MapMan:35.1 | : | : | : | : |
Description
Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5
Coordinates
chr8:+:121427947..121428690
Molecular Weight (calculated)
25388.4 Da
IEP (calculated)
10.014
GRAVY (calculated)
-0.542
Length
247 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPSGPAGAG AGPSSAAGAG GDDAHAHAPP QQHQIQPLAQ AQAQPQPHQL SRYESQKRRD WNTFLQYLQN HRPPLTLARC SGAHVIEFLK YLDQFGKTKV
101: HAAGCAHFGQ PSPPAPCPCP LHQAWGSLDA LIGRLRAAYE ESGHAPESNP FAARAVRIYL RDVRDAQAKA RGIPYEKKSR KRKQPPPAAA AGEAAAASSS
201: SAAAARVAAG SAGDGSSASG SAAAKAAPTT AQGSAAADAA TSTSRVQ
101: HAAGCAHFGQ PSPPAPCPCP LHQAWGSLDA LIGRLRAAYE ESGHAPESNP FAARAVRIYL RDVRDAQAKA RGIPYEKKSR KRKQPPPAAA AGEAAAASSS
201: SAAAARVAAG SAGDGSSASG SAAAKAAPTT AQGSAAADAA TSTSRVQ
001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
Arabidopsis Description
LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.