Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- nucleus 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G294600.2 | Wheat | nucleus, plastid | 92.62 | 97.0 |
| TraesCS1B01G305800.1 | Wheat | nucleus | 93.44 | 95.8 |
| HORVU1Hr1G070480.1 | Barley | nucleus | 86.89 | 91.38 |
| TraesCS3A01G348900.1 | Wheat | golgi | 61.07 | 70.28 |
| Os05t0472000-00 | Rice | nucleus | 68.44 | 70.17 |
| Zm00001d010596_P001 | Maize | nucleus | 67.62 | 66.8 |
| Zm00001d038442_P001 | Maize | nucleus | 66.39 | 65.59 |
| EES18364 | Sorghum | nucleus | 67.62 | 64.2 |
| GSMUA_Achr11P... | Banana | nucleus | 43.85 | 60.8 |
| GSMUA_AchrUn_... | Banana | nucleus | 45.08 | 59.14 |
| TraesCS2A01G382500.1 | Wheat | nucleus | 47.95 | 58.21 |
| TraesCS6A01G225000.1 | Wheat | nucleus | 47.13 | 56.93 |
| TraesCS1A01G222500.1 | Wheat | nucleus | 60.66 | 52.11 |
| GSMUA_Achr7P22390_001 | Banana | endoplasmic reticulum, nucleus | 43.44 | 51.21 |
| TraesCS6A01G377300.1 | Wheat | nucleus | 51.64 | 50.0 |
| GSMUA_Achr11P... | Banana | nucleus | 39.75 | 47.78 |
| TraesCS1A01G154900.1 | Wheat | nucleus | 45.49 | 46.06 |
| TraesCS6A01G139700.1 | Wheat | nucleus | 48.77 | 45.95 |
| TraesCS7A01G466000.1 | Wheat | nucleus | 49.59 | 45.15 |
| TraesCS2A01G254700.1 | Wheat | nucleus | 45.08 | 42.31 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G296900.1 | EnsemblPlantsGene:TraesCS1A01G296900 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF18 |
| PFAM:PF04852 | PFscan:PS51697 | SEG:seg | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr1A:+:492045923..492046657
Molecular Weight (calculated)
25452.9 Da
IEP (calculated)
10.108
GRAVY (calculated)
-0.607
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSPGTAGPP SSSAAGDAQQ PVALAVAPPQ PQPMPPPPQP MPPPPQQLSR YESQKRRDWN TFLQYLRNHR PPLTLARCSG AHVIEFLKYL DQFGKTKVHA
101: SGCAHYGQPS PPAPCPCPLR QAWGSLDALI GRLRAAYDES GHAPESNPFA ARAVRIYLRE VRDGQAKARG IPYEKKKRKR TPALPAGAAG EGASSSSVAT
201: AVPGRGEGGE QSGSGTTAAS PLPSPTGAQA EGSSVAAAPS TSRV
101: SGCAHYGQPS PPAPCPCPLR QAWGSLDALI GRLRAAYDES GHAPESNPFA ARAVRIYLRE VRDGQAKARG IPYEKKKRKR TPALPAGAAG EGASSSSVAT
201: AVPGRGEGGE QSGSGTTAAS PLPSPTGAQA EGSSVAAAPS TSRV
001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
Arabidopsis Description
LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.