Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G153700.1 | Wheat | nucleus | 85.06 | 99.51 |
| TraesCS1B01G172100.1 | Wheat | nucleus | 85.06 | 99.51 |
| HORVU1Hr1G041240.5 | Barley | nucleus | 81.74 | 86.78 |
| GSMUA_Achr11P... | Banana | nucleus | 32.78 | 84.04 |
| Zm00001d014032_P001 | Maize | nucleus | 69.29 | 79.52 |
| Zm00001d032696_P001 | Maize | nucleus | 70.12 | 79.34 |
| Os10t0478000-01 | Rice | nucleus | 66.39 | 78.43 |
| KXG38327 | Sorghum | nucleus | 69.71 | 75.34 |
| TraesCS2A01G382500.1 | Wheat | nucleus | 59.75 | 71.64 |
| TraesCS6A01G225000.1 | Wheat | nucleus | 58.92 | 70.3 |
| Solyc09g025280.1.1 | Tomato | nucleus | 49.79 | 70.18 |
| Bra023738.1-P | Field mustard | plastid | 50.21 | 68.75 |
| KRH34151 | Soybean | plastid | 50.21 | 68.75 |
| VIT_07s0005g03530.t01 | Wine grape | nucleus | 51.87 | 68.31 |
| CDY69731 | Canola | plastid | 52.28 | 64.62 |
| CDY35523 | Canola | plastid | 52.28 | 64.62 |
| GSMUA_Achr5P18640_001 | Banana | nucleus | 46.06 | 64.53 |
| PGSC0003DMT400026698 | Potato | nucleus | 49.38 | 64.32 |
| AT3G23290.2 | Thale cress | plastid | 51.87 | 64.1 |
| KRG92633 | Soybean | nucleus | 50.21 | 63.68 |
| VIT_05s0049g01170.t01 | Wine grape | nucleus | 53.11 | 63.68 |
| KRG95674 | Soybean | nucleus | 53.53 | 63.55 |
| KRG97044 | Soybean | plastid | 48.13 | 63.39 |
| KRH67397 | Soybean | nucleus | 53.11 | 63.05 |
| KRG92413 | Soybean | nucleus | 50.21 | 63.02 |
| GSMUA_Achr5P03870_001 | Banana | nucleus | 45.23 | 63.01 |
| VIT_14s0036g00540.t01 | Wine grape | plastid | 49.79 | 62.83 |
| CDX85083 | Canola | plastid | 51.87 | 62.81 |
| CDX77531 | Canola | plastid | 51.87 | 62.81 |
| Bra014935.1-P | Field mustard | plastid | 51.87 | 62.81 |
| KRH32192 | Soybean | nucleus | 53.53 | 62.32 |
| KRH68792 | Soybean | plastid | 46.89 | 61.41 |
| PGSC0003DMT400044213 | Potato | mitochondrion | 51.45 | 61.08 |
| PGSC0003DMT400051692 | Potato | nucleus | 52.7 | 61.06 |
| CDY52479 | Canola | nucleus, plastid | 48.13 | 61.05 |
| AT5G28490.1 | Thale cress | nucleus, plastid | 48.13 | 61.05 |
| CDY57024 | Canola | nucleus, plastid | 48.55 | 60.94 |
| KRH34391 | Soybean | nucleus | 51.04 | 60.89 |
| KRH56293 | Soybean | nucleus | 53.11 | 60.66 |
| Solyc09g090180.1.1 | Tomato | plastid | 52.28 | 60.58 |
| Bra036134.1-P | Field mustard | nucleus, plastid | 48.13 | 60.42 |
| CDY05593 | Canola | nucleus, plastid | 47.72 | 60.21 |
| CDY52505 | Canola | nucleus, plastid | 47.72 | 60.21 |
| GSMUA_Achr5P14570_001 | Banana | nucleus | 43.15 | 60.12 |
| CDX86199 | Canola | plastid | 47.72 | 59.9 |
| Bra020610.1-P | Field mustard | nucleus, plastid | 47.3 | 59.69 |
| GSMUA_Achr4P21940_001 | Banana | nucleus | 43.15 | 59.43 |
| CDY64755 | Canola | nucleus, plastid | 47.3 | 59.38 |
| Solyc06g083860.2.1 | Tomato | nucleus | 53.53 | 59.17 |
| Bra009997.1-P | Field mustard | plastid | 46.89 | 58.85 |
| PGSC0003DMT400029945 | Potato | nucleus | 43.98 | 57.92 |
| CDY21126 | Canola | nucleus, plastid | 45.64 | 57.89 |
| Solyc04g009980.2.1 | Tomato | nucleus, plastid | 43.15 | 57.78 |
| CDY24755 | Canola | nucleus, plastid | 51.45 | 57.67 |
| Bra018263.1-P | Field mustard | nucleus | 51.45 | 57.67 |
| CDY10790 | Canola | nucleus | 51.45 | 57.67 |
| CDY30000 | Canola | nucleus, plastid | 45.23 | 57.37 |
| CDY57088 | Canola | nucleus | 51.45 | 57.14 |
| CDY57087 | Canola | nucleus | 51.45 | 57.14 |
| Bra021707.1-P | Field mustard | nucleus | 51.45 | 57.14 |
| CDY15426 | Canola | nucleus | 51.45 | 57.14 |
| AT2G31160.1 | Thale cress | nucleus | 51.87 | 57.08 |
| CDY63294 | Canola | nucleus | 43.57 | 57.07 |
| CDX74186 | Canola | nucleus, plastid | 44.81 | 56.84 |
| Bra001109.1-P | Field mustard | nucleus, plastid | 44.81 | 56.84 |
| GSMUA_Achr4P28760_001 | Banana | nucleus | 43.15 | 56.83 |
| CDY49331 | Canola | nucleus, plastid | 44.81 | 55.1 |
| CDY42932 | Canola | nucleus, plastid | 44.81 | 54.82 |
| AT3G04510.1 | Thale cress | nucleus, plastid | 45.64 | 54.73 |
| TraesCS6A01G377300.1 | Wheat | nucleus | 56.85 | 54.37 |
| Bra040188.1-P | Field mustard | nucleus, plastid | 44.4 | 54.31 |
| TraesCS3A01G348900.1 | Wheat | golgi | 47.3 | 53.77 |
| PGSC0003DMT400060169 | Potato | nucleus, plastid | 44.81 | 51.67 |
| Solyc05g055020.2.1 | Tomato | nucleus | 45.23 | 51.66 |
| TraesCS6A01G139700.1 | Wheat | nucleus | 53.11 | 49.42 |
| TraesCS7A01G466000.1 | Wheat | nucleus | 52.7 | 47.39 |
| TraesCS1A01G296900.1 | Wheat | nucleus, plastid | 46.06 | 45.49 |
| TraesCS1A01G222500.1 | Wheat | nucleus | 49.79 | 42.25 |
| TraesCS2A01G254700.1 | Wheat | nucleus | 41.91 | 38.85 |
| Bra040137.1-P | Field mustard | nucleus, plastid | 45.64 | 37.04 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G154900.1 | EnsemblPlantsGene:TraesCS1A01G154900 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF15 |
| PFAM:PF04852 | PFscan:PS51697 | SEG:seg | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr1A:-:271619747..271621923
Molecular Weight (calculated)
26447.0 Da
IEP (calculated)
10.956
GRAVY (calculated)
-0.860
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTTTSQADA AVWWSTIRGI ERRRRVRGWR RQQISMDLVP QPDSPHSDGS GGATSGASSA VSSLSPGGAV SPSPSRYESQ KRRDWNTFGQ YLRNHRPPLS
101: LARCSGAHVL EFLRYLDQFG KTKVHAAGCP FFGHPVPPAP CPCPLRQAWG SLDALVGRLR AAYEENGGRP ENNPFGARAV RLYLREVREH QSRARGVSYD
201: KKKRRKPPHP PGSGDIPSHE GNSNGHHQYH QMPPPPPGAA A
101: LARCSGAHVL EFLRYLDQFG KTKVHAAGCP FFGHPVPPAP CPCPLRQAWG SLDALVGRLR AAYEENGGRP ENNPFGARAV RLYLREVREH QSRARGVSYD
201: KKKRRKPPHP PGSGDIPSHE GNSNGHHQYH QMPPPPPGAA A
001: MDMIPQLMEG SSAYGGVTNL NIISNNSSSV TGATGGEATQ PLSSSSSPSA NSSRYENQKR RDWNTFGQYL RNHRPPLSLS RCSGAHVLEF LRYLDQFGKT
101: KVHTNICHFY GHPNPPAPCP CPLRQAWGSL DALIGRLRAA FEENGGKPET NPFGARAVRL YLREVRDMQS KARGVSYEKK KRKRPLPSSS TSSSSAVASH
201: QQFQMLPGTS STTQLKFEK
101: KVHTNICHFY GHPNPPAPCP CPLRQAWGSL DALIGRLRAA FEENGGKPET NPFGARAVRL YLREVRDMQS KARGVSYEKK KRKRPLPSSS TSSSSAVASH
201: QQFQMLPGTS STTQLKFEK
Arabidopsis Description
LSH3Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 [Source:UniProtKB/Swiss-Prot;Acc:O82268]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.