Factsheet for GSMUA_Achr5P03870_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P14570_001	Banana	nucleus	89.6	89.6
GSMUA_Achr4P21940_001	Banana	nucleus	87.86	86.86
GSMUA_Achr5P18640_001	Banana	nucleus	84.39	84.88
GSMUA_Achr4P28760_001	Banana	nucleus	79.77	75.41
GSMUA_Achr1P09270_001	Banana	nucleus	63.58	63.95
GSMUA_AchrUn_...	Banana	nucleus	56.07	62.99
GSMUA_Achr11P...	Banana	nucleus	34.1	62.77
Solyc09g025280.1.1	Tomato	nucleus	59.54	60.23
Bra023738.1-P	Field mustard	plastid	60.69	59.66
VIT_07s0005g03530.t01	Wine grape	nucleus	63.01	59.56
Zm00001d025863_P001	Maize	nucleus	57.8	59.52
PGSC0003DMT400026698	Potato	nucleus	60.69	56.76
GSMUA_Achr1P05650_001	Banana	nucleus	53.18	56.1
KRG92413	Soybean	nucleus	61.85	55.73
KRH34151	Soybean	plastid	56.65	55.68
KRH32192	Soybean	nucleus	66.47	55.56
CDY35523	Canola	plastid	62.43	55.38
CDY69731	Canola	plastid	62.43	55.38
KRH34391	Soybean	nucleus	64.16	54.95
Os04t0516200-01	Rice	nucleus	64.16	54.95
AT3G23290.2	Thale cress	plastid	61.85	54.87
PGSC0003DMT400044213	Potato	mitochondrion	64.16	54.68
KRG95674	Soybean	nucleus	63.58	54.19
KRH67397	Soybean	nucleus	63.58	54.19
VIT_14s0036g00540.t01	Wine grape	plastid	59.54	53.93
GSMUA_AchrUn_...	Banana	nucleus	57.8	53.76
TraesCS2B01G399800.1	Wheat	nucleus	62.43	53.73
TraesCS2D01G378900.1	Wheat	nucleus	62.43	53.73
KRH56293	Soybean	nucleus	65.32	53.55
PGSC0003DMT400051692	Potato	nucleus	64.16	53.37
Solyc09g090180.1.1	Tomato	plastid	64.16	53.37
Bra014935.1-P	Field mustard	plastid	61.27	53.27
CDX77531	Canola	plastid	61.27	53.27
CDX85083	Canola	plastid	61.27	53.27
EES11114	Sorghum	nucleus	61.27	53.27
HORVU2Hr1G089190.1	Barley	nucleus	61.27	53.27
VIT_05s0049g01170.t01	Wine grape	nucleus	61.85	53.23
KRG97044	Soybean	plastid	56.07	53.01
Zm00001d003057_P001	Maize	nucleus	61.27	53.0
Os10t0478000-01	Rice	nucleus	62.43	52.94
TraesCS1B01G172100.1	Wheat	nucleus	63.01	52.91
TraesCS1D01G153700.1	Wheat	nucleus	63.01	52.91
TraesCS2A01G382500.1	Wheat	nucleus	61.27	52.74
Zm00001d014032_P001	Maize	nucleus	63.58	52.38
GSMUA_Achr11P...	Banana	nucleus	53.18	52.27
AT5G28490.1	Thale cress	nucleus, plastid	57.23	52.11
CDY52479	Canola	nucleus, plastid	57.23	52.11
KRG92633	Soybean	nucleus	57.23	52.11
Zm00001d032696_P001	Maize	nucleus	63.58	51.64
CDX86199	Canola	plastid	57.23	51.56
GSMUA_Achr6P36540_001	Banana	nucleus	47.98	51.55
TraesCS6B01G256500.1	Wheat	nucleus	59.54	51.5
TraesCS6A01G225000.1	Wheat	nucleus	60.12	51.49
TraesCS6D01G209700.1	Wheat	nucleus	60.12	51.49
KRH68792	Soybean	plastid	54.34	51.09
CDY57024	Canola	nucleus, plastid	56.65	51.04
HORVU6Hr1G058340.2	Barley	nucleus	60.12	50.98
Zm00001d017263_P001	Maize	nucleus	60.12	50.98
KXG30661	Sorghum	nucleus	61.27	50.96
CDY05593	Canola	nucleus, plastid	56.07	50.79
CDY52505	Canola	nucleus, plastid	56.07	50.79
Bra009997.1-P	Field mustard	plastid	56.07	50.52
Bra036134.1-P	Field mustard	nucleus, plastid	56.07	50.52
CDY64755	Canola	nucleus, plastid	56.07	50.52
Zm00001d051143_P001	Maize	nucleus	58.96	50.49
Solyc06g083860.2.1	Tomato	nucleus	63.58	50.46
PGSC0003DMT400029945	Potato	nucleus	53.18	50.27
GSMUA_Achr9P30540_001	Banana	nucleus	53.76	50.27
Bra020610.1-P	Field mustard	nucleus, plastid	55.49	50.26
Bra001109.1-P	Field mustard	nucleus, plastid	54.91	50.0
CDX74186	Canola	nucleus, plastid	54.91	50.0
CDY21126	Canola	nucleus, plastid	54.91	50.0
Solyc04g009980.2.1	Tomato	nucleus, plastid	52.02	50.0
KXG38327	Sorghum	nucleus	64.16	49.78
CDY30000	Canola	nucleus, plastid	54.34	49.47
CDY15426	Canola	nucleus	61.85	49.31
Bra018263.1-P	Field mustard	nucleus	61.27	49.3
CDY10790	Canola	nucleus	61.27	49.3
CDY24755	Canola	nucleus, plastid	61.27	49.3
GSMUA_Achr11P...	Banana	nucleus	56.65	49.25
Bra021707.1-P	Field mustard	nucleus	61.27	48.85
CDY57087	Canola	nucleus	61.27	48.85
CDY57088	Canola	nucleus	61.27	48.85
GSMUA_Achr5P00260_001	Banana	nucleus	57.23	48.53
CDY49331	Canola	nucleus, plastid	54.91	48.47
AT2G31160.1	Thale cress	nucleus	61.27	48.4
CDY63294	Canola	nucleus	51.45	48.37
Os02t0623400-00	Rice	nucleus	58.38	48.33
CDY42932	Canola	nucleus, plastid	54.91	48.22
HORVU1Hr1G041240.5	Barley	nucleus	63.01	48.02
GSMUA_Achr4P31900_001	Banana	nucleus	52.02	47.87
AT3G04510.1	Thale cress	nucleus, plastid	55.49	47.76
Bra040188.1-P	Field mustard	nucleus, plastid	54.34	47.72
PGSC0003DMT400060169	Potato	nucleus, plastid	56.65	46.89
GSMUA_AchrUn_...	Banana	nucleus	56.07	46.63
TraesCS6A01G377300.1	Wheat	nucleus	67.05	46.03
TraesCS6B01G414700.1	Wheat	nucleus	67.05	46.03
TraesCS6D01G361900.1	Wheat	nucleus	67.05	46.03
GSMUA_Achr7P22390_001	Banana	endoplasmic reticulum, nucleus	54.91	45.89
Solyc05g055020.2.1	Tomato	nucleus	55.49	45.5
GSMUA_Achr11P...	Banana	nucleus	58.38	45.5
Zm00001d018433_P001	Maize	nucleus	64.74	45.34
TraesCS1A01G154900.1	Wheat	nucleus	63.01	45.23
GSMUA_Achr6P08720_001	Banana	nucleus	51.45	45.18
GSMUA_Achr3P10070_001	Banana	nucleus	56.65	45.16
Os02t0811000-01	Rice	nucleus	64.74	45.16
Zm00001d051966_P001	Maize	nucleus	64.16	45.12
GSMUA_Achr5P07420_001	Banana	nucleus	54.91	44.81
EES05986	Sorghum	nucleus	64.74	44.62
HORVU6Hr1G088790.1	Barley	nucleus	65.32	44.14
GSMUA_Achr8P01890_001	Banana	nucleus	50.87	43.35
GSMUA_Achr11P...	Banana	nucleus	50.29	42.86
GSMUA_Achr10P...	Banana	nucleus	50.29	42.65
GSMUA_Achr7P18300_001	Banana	nucleus	49.71	41.75
GSMUA_Achr5P29450_001	Banana	cytosol, nucleus, plastid	54.34	35.07
Bra040137.1-P	Field mustard	nucleus, plastid	54.91	31.99
GSMUA_Achr9P18050_001	Banana	nucleus	50.29	30.63

Protein Annotations

EnsemblPlants:GSMUA_Achr5P03870_001	EnsemblPlants:GSMUA_Achr5T03870_001	EnsemblPlantsGene:GSMUA_Achr5G03870_001	InterPro:ALOG_dom	InterPro:IPR006936	PANTHER:PTHR31165
PANTHER:PTHR31165:SF36	PFAM:PF04852	PFscan:PS51697	SEG:seg	UniParc:UPI000296C80C	UniProt:M0SVG6
MapMan:35.1	:	:	:	:	:

Description

Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G03870_001]

Coordinates

chr5:-:2735049..2735639

Molecular Weight (calculated)

19052.2 Da

IEP (calculated)

10.530

GRAVY (calculated)

-0.950

Length

173 amino acids

Sequence
(BLAST)

001: MDLVPNPDSP HSNNSGGSSP NSSPQNFSSS SSAATAGGAA ASSSPPSLSR YESQKRRDWN TFGQYLRNHR PPLSLAQCSS AHVLEFLRYL DQFGKTKIHT
101: HILDALIGRL RAAYEENGGK PETNPFGARA VRLYLREVRE VQSKARGISY EKKKRKKPQQ HEQHHPPPPP AAA

Best Arabidopsis Sequence Match ( AT2G31160.1 )
(BLAST)

001: MDMIPQLMEG SSAYGGVTNL NIISNNSSSV TGATGGEATQ PLSSSSSPSA NSSRYENQKR RDWNTFGQYL RNHRPPLSLS RCSGAHVLEF LRYLDQFGKT
101: KVHTNICHFY GHPNPPAPCP CPLRQAWGSL DALIGRLRAA FEENGGKPET NPFGARAVRL YLREVRDMQS KARGVSYEKK KRKRPLPSSS TSSSSAVASH
201: QQFQMLPGTS STTQLKFEK

Arabidopsis Description

LSH3Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 [Source:UniProtKB/Swiss-Prot;Acc:O82268]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.