Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
19621931
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G058340.2 | Barley | nucleus | 85.17 | 87.25 |
| TraesCS6A01G225000.1 | Wheat | nucleus | 84.21 | 87.13 |
| TraesCS6D01G209700.1 | Wheat | nucleus | 84.21 | 87.13 |
| TraesCS6B01G256500.1 | Wheat | nucleus | 83.25 | 87.0 |
| Zm00001d025863_P001 | Maize | nucleus | 69.38 | 86.31 |
| Zm00001d051143_P001 | Maize | nucleus | 82.78 | 85.64 |
| EES11114 | Sorghum | nucleus | 79.43 | 83.42 |
| Os04t0516200-01 | Rice | nucleus | 80.38 | 83.17 |
| Zm00001d003057_P001 | Maize | nucleus | 79.43 | 83.0 |
| GSMUA_Achr11P... | Banana | nucleus | 36.84 | 81.91 |
| Bra023738.1-P | Field mustard | plastid | 58.85 | 69.89 |
| KRH34151 | Soybean | plastid | 58.85 | 69.89 |
| VIT_07s0005g03530.t01 | Wine grape | nucleus | 60.77 | 69.4 |
| Os10t0478000-01 | Rice | nucleus | 67.46 | 69.12 |
| Solyc09g025280.1.1 | Tomato | nucleus | 55.98 | 68.42 |
| KRG92413 | Soybean | nucleus | 62.68 | 68.23 |
| KRG97044 | Soybean | plastid | 57.42 | 65.57 |
| KRG92633 | Soybean | nucleus | 59.33 | 65.26 |
| CDY35523 | Canola | plastid | 60.77 | 65.13 |
| AT3G23290.2 | Thale cress | plastid | 60.77 | 65.13 |
| CDY69731 | Canola | plastid | 60.77 | 65.13 |
| KRH34391 | Soybean | nucleus | 62.68 | 64.85 |
| VIT_05s0049g01170.t01 | Wine grape | nucleus | 61.72 | 64.18 |
| KRH68792 | Soybean | plastid | 55.98 | 63.59 |
| PGSC0003DMT400026698 | Potato | nucleus | 55.98 | 63.24 |
| CDX85083 | Canola | plastid | 59.81 | 62.81 |
| CDX77531 | Canola | plastid | 59.81 | 62.81 |
| Bra014935.1-P | Field mustard | plastid | 59.81 | 62.81 |
| KRH67397 | Soybean | nucleus | 60.77 | 62.56 |
| KRG95674 | Soybean | nucleus | 60.77 | 62.56 |
| PGSC0003DMT400044213 | Potato | mitochondrion | 60.77 | 62.56 |
| Solyc09g090180.1.1 | Tomato | plastid | 62.2 | 62.5 |
| KRH32192 | Soybean | nucleus | 61.72 | 62.32 |
| CDY52479 | Canola | nucleus, plastid | 56.46 | 62.11 |
| CDX86199 | Canola | plastid | 56.94 | 61.98 |
| AT5G28490.1 | Thale cress | nucleus, plastid | 55.98 | 61.58 |
| VIT_14s0036g00540.t01 | Wine grape | plastid | 55.98 | 61.26 |
| CDY57024 | Canola | nucleus, plastid | 55.98 | 60.94 |
| Bra009997.1-P | Field mustard | plastid | 55.98 | 60.94 |
| KRH56293 | Soybean | nucleus | 61.24 | 60.66 |
| Bra036134.1-P | Field mustard | nucleus, plastid | 55.5 | 60.42 |
| Os02t0166800-01 | Rice | nucleus | 55.02 | 60.21 |
| Bra020610.1-P | Field mustard | nucleus, plastid | 55.02 | 60.21 |
| PGSC0003DMT400051692 | Potato | nucleus | 59.81 | 60.1 |
| CDY64755 | Canola | nucleus, plastid | 55.02 | 59.9 |
| GSMUA_Achr5P18640_001 | Banana | nucleus | 49.28 | 59.88 |
| CDY05593 | Canola | nucleus, plastid | 54.55 | 59.69 |
| CDY52505 | Canola | nucleus, plastid | 54.55 | 59.69 |
| Solyc06g083860.2.1 | Tomato | nucleus | 62.2 | 59.63 |
| GSMUA_Achr5P14570_001 | Banana | nucleus | 49.28 | 59.54 |
| GSMUA_Achr5P03870_001 | Banana | nucleus | 48.33 | 58.38 |
| CDY63294 | Canola | nucleus | 50.72 | 57.61 |
| Bra001109.1-P | Field mustard | nucleus, plastid | 51.67 | 56.84 |
| CDX74186 | Canola | nucleus, plastid | 51.67 | 56.84 |
| CDY24755 | Canola | nucleus, plastid | 58.37 | 56.74 |
| GSMUA_Achr4P21940_001 | Banana | nucleus | 47.37 | 56.57 |
| PGSC0003DMT400029945 | Potato | nucleus | 49.28 | 56.28 |
| CDY10790 | Canola | nucleus | 57.89 | 56.28 |
| Bra018263.1-P | Field mustard | nucleus | 57.89 | 56.28 |
| CDY57088 | Canola | nucleus | 58.37 | 56.22 |
| Bra021707.1-P | Field mustard | nucleus | 58.37 | 56.22 |
| CDY15426 | Canola | nucleus | 58.37 | 56.22 |
| CDY57087 | Canola | nucleus | 58.37 | 56.22 |
| AT2G31160.1 | Thale cress | nucleus | 58.85 | 56.16 |
| CDY21126 | Canola | nucleus, plastid | 50.72 | 55.79 |
| Solyc04g009980.2.1 | Tomato | nucleus, plastid | 47.85 | 55.56 |
| CDY30000 | Canola | nucleus, plastid | 50.24 | 55.26 |
| CDY49331 | Canola | nucleus, plastid | 51.67 | 55.1 |
| CDY42932 | Canola | nucleus, plastid | 51.67 | 54.82 |
| AT3G04510.1 | Thale cress | nucleus, plastid | 52.63 | 54.73 |
| Os01t0828900-00 | Rice | nucleus, plastid | 55.5 | 54.72 |
| GSMUA_Achr4P28760_001 | Banana | nucleus | 47.85 | 54.64 |
| Bra040188.1-P | Field mustard | nucleus, plastid | 51.2 | 54.31 |
| Os02t0811000-01 | Rice | nucleus | 61.72 | 52.02 |
| PGSC0003DMT400060169 | Potato | nucleus, plastid | 51.67 | 51.67 |
| Solyc05g055020.2.1 | Tomato | nucleus | 52.15 | 51.66 |
| Os05t0472000-00 | Rice | nucleus | 53.11 | 46.64 |
| Os06t0672400-01 | Rice | nucleus | 61.24 | 46.21 |
| Os05t0347400-01 | Rice | nucleus | 58.37 | 42.96 |
| Os07t0139300-01 | Rice | nucleus | 51.2 | 38.77 |
| Bra040137.1-P | Field mustard | nucleus, plastid | 50.72 | 35.69 |
| Os08t0248000-00 | Rice | nucleus | 30.14 | 31.19 |
Protein Annotations
| MapMan:35.1 | EntrezGene:4330024 | UniProt:A0A0P0VM14 | InterPro:ALOG_dom | ProteinID:BAS79840.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009299 | GO:GO:0009416 | GO:GO:0009628 | GO:GO:0009653 |
| GO:GO:0009987 | GO:GO:0090698 | InterPro:IPR006936 | EnsemblPlantsGene:Os02g0623400 | EnsemblPlants:Os02t0623400-00 | PFAM:PF04852 |
| PFscan:PS51697 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF12 | UniParc:UPI0000F0FA5D | RefSeq:XP_015624141.1 | SEG:seg |
Description
G1 LIKE PROTEIN 3Similar to G1-like protein. (Os02t0623400-00)
Coordinates
chr2:-:24830558..24831992
Molecular Weight (calculated)
21809.5 Da
IEP (calculated)
10.143
GRAVY (calculated)
-0.772
Length
209 amino acids
Sequence
(BLAST)
(BLAST)
001: MELSPPNHES SPPTAGGGGG GGGDGAGGSS SAGASSSAGG GAATPQTPSR YEAQKRRDWN TFGQYLRNHR PPLGLAQCSG AHVLEFLRYL DQFGKTKVHT
101: AACPFFGHPN PPAPCPCPLR QAWGSLDALV GRLRAAFEEN GGRPESNPFA VRAVRLYLRE VREHQARARG VSYEKKKRKK PQPADTSGGG GHPHPPPPPP
201: PPPSAGAAC
101: AACPFFGHPN PPAPCPCPLR QAWGSLDALV GRLRAAFEEN GGRPESNPFA VRAVRLYLRE VREHQARARG VSYEKKKRKK PQPADTSGGG GHPHPPPPPP
201: PPPSAGAAC
001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
Arabidopsis Description
LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.