Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os10t0478000-01 | Rice | nucleus | 35.64 | 35.29 |
| Os02t0166800-01 | Rice | nucleus | 32.67 | 34.55 |
| GSMUA_Achr9P30540_001 | Banana | nucleus | 31.19 | 34.05 |
| Os01t0828900-00 | Rice | nucleus, plastid | 33.66 | 32.08 |
| GSMUA_Achr4P31900_001 | Banana | nucleus | 29.7 | 31.91 |
| Os04t0516200-01 | Rice | nucleus | 31.68 | 31.68 |
| PGSC0003DMT400054474 | Potato | plastid | 27.23 | 31.43 |
| GSMUA_Achr5P00260_001 | Banana | nucleus | 30.69 | 30.39 |
| Solyc02g069510.1.1 | Tomato | nucleus | 27.23 | 30.39 |
| GSMUA_AchrUn_... | Banana | nucleus | 31.19 | 30.29 |
| Os02t0623400-00 | Rice | nucleus | 31.19 | 30.14 |
| Os05t0472000-00 | Rice | nucleus | 34.16 | 28.99 |
| Os06t0672400-01 | Rice | nucleus | 39.6 | 28.88 |
| GSMUA_Achr11P... | Banana | nucleus | 31.68 | 28.83 |
| Os02t0811000-01 | Rice | nucleus | 34.16 | 27.82 |
| KRH58368 | Soybean | nucleus | 32.18 | 27.54 |
| KRH42251 | Soybean | plastid | 33.66 | 27.53 |
| Os05t0347400-01 | Rice | nucleus | 32.67 | 23.24 |
| Os07t0139300-01 | Rice | nucleus | 28.22 | 20.65 |
Protein Annotations
| MapMan:35.1 | UniProt:A0A0P0XDG8 | InterPro:ALOG_dom | ProteinID:BAT04541.1 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009299 | GO:GO:0009416 | GO:GO:0009628 | GO:GO:0009987 | InterPro:IPR006936 | EnsemblPlantsGene:Os08g0248000 |
| EnsemblPlants:Os08t0248000-00 | PFAM:PF04852 | PFscan:PS51697 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF5 | UniParc:UPI0003938E90 |
| SEG:seg | : | : | : | : | : |
Description
Similar to predicted protein. (Os08t0248000-00)
Coordinates
chr8:-:9030748..9031356
Molecular Weight (calculated)
22061.4 Da
IEP (calculated)
12.320
GRAVY (calculated)
-0.697
Length
202 amino acids
Sequence
(BLAST)
(BLAST)
001: MARTVAGGVE RGGGGGGRAR GRRSHPSLPV PCPCLLRQAW GSLNALVGRF RAAFEEHGGQ PEANPFGARA VRLYLHEVYD CQAKARGIAY EKKRWKRPPT
101: SSSHSQAAAA ATSSASQPLA RCRHRRCRRD QPTWELVSPS PSPWGARHSR QPPAAAAPIA RSLAASCHAL ARRRCRSAGR VLVHRRRRPT PLRWPPFSPS
201: PP
101: SSSHSQAAAA ATSSASQPLA RCRHRRCRRD QPTWELVSPS PSPWGARHSR QPPAAAAPIA RSLAASCHAL ARRRCRSAGR VLVHRRRRPT PLRWPPFSPS
201: PP
001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
Arabidopsis Description
LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.