Factsheet for PGSC0003DMT400054474

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g069510.1.1	Tomato	nucleus	96.0	92.82
Os02t0166800-01	Rice	nucleus	62.29	57.07
PGSC0003DMT400026698	Potato	nucleus	60.0	56.76
PGSC0003DMT400052658	Potato	nucleus	54.86	55.49
PGSC0003DMT400044213	Potato	mitochondrion	64.0	55.17
PGSC0003DMT400051692	Potato	nucleus	63.43	53.37
PGSC0003DMT400029945	Potato	nucleus	54.86	52.46
PGSC0003DMT400027334	Potato	nucleus	52.57	51.69
PGSC0003DMT400026433	Potato	nucleus	55.43	50.79
PGSC0003DMT400018295	Potato	nucleus	54.86	50.26
PGSC0003DMT400060169	Potato	nucleus, plastid	60.0	50.24
PGSC0003DMT400039811	Potato	nucleus	57.14	48.78
KRH58368	Soybean	nucleus	64.57	47.88
GSMUA_Achr4P31900_001	Banana	nucleus	50.86	47.34
PGSC0003DMT400078091	Potato	nucleus	60.0	47.09
GSMUA_Achr9P30540_001	Banana	nucleus	49.71	47.03
PGSC0003DMT400054899	Potato	nucleus	55.43	46.86
KRH42251	Soybean	plastid	65.14	46.15
GSMUA_Achr5P00260_001	Banana	nucleus	52.0	44.61
Zm00001d015342_P001	Maize	nucleus	62.86	44.53
TraesCS6A01G139700.1	Wheat	nucleus	63.43	42.86
GSMUA_AchrUn_...	Banana	nucleus	50.86	42.79
EES04579	Sorghum	nucleus	62.86	42.64
TraesCS6D01G129400.1	Wheat	nucleus	62.86	42.47
GSMUA_Achr11P...	Banana	nucleus	53.71	42.34
TraesCS6B01G168300.1	Wheat	nucleus, plastid	62.86	42.31
TraesCS7B01G367400.1	Wheat	nucleus	62.29	40.67
TraesCS7A01G466000.1	Wheat	nucleus	62.29	40.67
HORVU7Hr1G106960.2	Barley	nucleus	62.29	40.52
TraesCS7D01G453600.1	Wheat	nucleus	61.71	40.3
Zm00001d046998_P001	Maize	nucleus	62.86	39.71
Os06t0672400-01	Rice	nucleus	62.86	39.71
Zm00001d036617_P001	Maize	nucleus	61.71	38.99
KXG34092	Sorghum	nucleus	62.29	38.65
OQU76862	Sorghum	nucleus	62.29	38.65
HORVU2Hr1G060890.2	Barley	nucleus, plastid	52.57	35.38
TraesCS2B01G267400.1	Wheat	nucleus	50.29	34.24
TraesCS2D01G255200.1	Wheat	nucleus	50.86	34.23
Zm00001d018775_P001	Maize	nucleus	49.71	33.98
TraesCS2A01G254700.1	Wheat	nucleus	50.29	33.85
Os07t0139300-01	Rice	nucleus	50.86	32.25
EER97956	Sorghum	mitochondrion, nucleus	51.43	31.69
Os08t0248000-00	Rice	nucleus	31.43	27.23

Protein Annotations

EnsemblPlants:PGSC0003DMT400054474	EnsemblPlantsGene:PGSC0003DMG400021140	EntrezGene:102583639	InterPro:ALOG_dom	InterPro:IPR006936	PANTHER:PTHR31165
PANTHER:PTHR31165:SF36	PFAM:PF04852	PFscan:PS51697	PGSC:PGSC0003DMG400021140	RefSeq:XP_006353047.1	SEG:seg
UniParc:UPI0002956EA3	UniProt:M1BWD7	MapMan:35.1	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400021140]

Coordinates

chr2:-:28649847..28650491

Molecular Weight (calculated)

19792.8 Da

IEP (calculated)

10.214

GRAVY (calculated)

-0.609

Length

175 amino acids

Sequence
(BLAST)

001: MLDVYSTINS VSQNFSLPSA PPLPPLSSPP TVSRYELQKR RDWNTFGQYL RNHKPPLILS RCSGANILEF LKYLDQFGKT KVHNCNCPFF GDPHPPAPCN
101: CPLKQAWGSL DALIGRLRAA FEENGGRTET NPFGARAVRL YLKEVRDTQA KARGIAYEKK KKRNIKQRIS TNICD

Best Arabidopsis Sequence Match ( AT1G07090.1 )
(BLAST)

001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP

Arabidopsis Description

LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.