Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d046998_P001 | Maize | nucleus | 89.53 | 89.53 |
| OQU76862 | Sorghum | nucleus | 89.89 | 88.3 |
| KXG34092 | Sorghum | nucleus | 89.89 | 88.3 |
| Zm00001d015342_P001 | Maize | nucleus | 64.98 | 72.87 |
| Zm00001d025863_P001 | Maize | nucleus | 43.68 | 72.02 |
| TraesCS7A01G466000.1 | Wheat | nucleus | 66.79 | 69.03 |
| Os06t0672400-01 | Rice | nucleus | 68.95 | 68.95 |
| TraesCS7B01G367400.1 | Wheat | nucleus | 66.43 | 68.66 |
| TraesCS7D01G453600.1 | Wheat | nucleus | 66.43 | 68.66 |
| HORVU7Hr1G106960.2 | Barley | nucleus | 66.43 | 68.4 |
| Zm00001d003057_P001 | Maize | nucleus | 45.85 | 63.5 |
| Zm00001d017263_P001 | Maize | nucleus | 46.21 | 62.75 |
| PGSC0003DMT400054474 | Potato | plastid | 38.99 | 61.71 |
| Solyc02g069510.1.1 | Tomato | nucleus | 39.71 | 60.77 |
| Zm00001d014032_P001 | Maize | nucleus | 45.85 | 60.48 |
| Zm00001d032696_P001 | Maize | nucleus | 46.21 | 60.09 |
| Zm00001d051143_P001 | Maize | nucleus | 43.68 | 59.9 |
| GSMUA_Achr9P30540_001 | Banana | nucleus | 39.35 | 58.92 |
| Zm00001d043011_P001 | Maize | nucleus | 43.68 | 57.89 |
| GSMUA_AchrUn_... | Banana | nucleus | 42.96 | 57.21 |
| GSMUA_Achr4P31900_001 | Banana | nucleus | 38.63 | 56.91 |
| Zm00001d012473_P001 | Maize | nucleus | 42.24 | 56.25 |
| GSMUA_Achr5P00260_001 | Banana | nucleus | 40.43 | 54.9 |
| GSMUA_Achr11P... | Banana | nucleus | 41.16 | 51.35 |
| KRH58368 | Soybean | nucleus | 43.32 | 50.85 |
| Zm00001d051966_P001 | Maize | nucleus | 44.77 | 50.41 |
| Zm00001d018433_P001 | Maize | nucleus | 44.04 | 49.39 |
| Zm00001d038442_P001 | Maize | nucleus | 43.32 | 48.58 |
| KRH42251 | Soybean | plastid | 43.32 | 48.58 |
| Zm00001d010596_P001 | Maize | nucleus | 42.96 | 48.18 |
| Zm00001d018775_P001 | Maize | nucleus | 40.43 | 43.75 |
| Zm00001d038016_P001 | Maize | extracellular | 43.68 | 40.2 |
| Zm00001d010507_P001 | Maize | nucleus, plastid | 42.96 | 37.66 |
| Zm00001d036993_P001 | Maize | mitochondrion | 16.97 | 27.17 |
| Zm00001d020559_P001 | Maize | mitochondrion | 7.94 | 10.73 |
Protein Annotations
| EnsemblPlants:Zm00001d036617_P001 | EnsemblPlants:Zm00001d036617_T001 | EnsemblPlantsGene:Zm00001d036617 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 |
| PANTHER:PTHR31165:SF5 | PFAM:PF04852 | PFscan:PS51697 | ProteinID:AQK81530.1 | SEG:seg | UniParc:UPI0008449E22 |
| UniProt:A0A1D6LPV4 | MapMan:35.1 | : | : | : | : |
Description
Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5
Coordinates
chr6:+:94836282..94837115
Molecular Weight (calculated)
29578.6 Da
IEP (calculated)
9.290
GRAVY (calculated)
-0.490
Length
277 amino acids
Sequence
(BLAST)
(BLAST)
001: MQMHVGGGAA DSPEATRPSR YESQKRRDWH TFGQYLRNHR PPLELARCSG AHVLEFLRYL DQFGKTKVHA AGCPFFGHPS PPAPCPCPLR QAWGSLDALV
101: GRLRAAFEEH GGRPEANPFG ARAVRLYLRE VRDSQAKARG IAYEKKRRKR PSSFASASSQ SSPQAATSPP QQAAPASSPI LSDAAAERAD VRAFVSDAGH
201: GHGHGHQQQH HFFMPHPQFL HGFSLLPGNP EAVAGNGNGS SSSASVAASS GDEIALALAA AEEAHAAGCM LPLSVFN
101: GRLRAAFEEH GGRPEANPFG ARAVRLYLRE VRDSQAKARG IAYEKKRRKR PSSFASASSQ SSPQAATSPP QQAAPASSPI LSDAAAERAD VRAFVSDAGH
201: GHGHGHQQQH HFFMPHPQFL HGFSLLPGNP EAVAGNGNGS SSSASVAASS GDEIALALAA AEEAHAAGCM LPLSVFN
001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
Arabidopsis Description
LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.