Factsheet for Os06t0672400-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0166800-01	Rice	nucleus	54.51	79.06
TraesCS7D01G453600.1	Wheat	nucleus	72.56	75.0
TraesCS7B01G367400.1	Wheat	nucleus	72.56	75.0
TraesCS7A01G466000.1	Wheat	nucleus	72.56	75.0
HORVU7Hr1G106960.2	Barley	nucleus	72.56	74.72
Zm00001d046998_P001	Maize	nucleus	70.04	70.04
KXG34092	Sorghum	nucleus	70.4	69.15
OQU76862	Sorghum	nucleus	70.4	69.15
Zm00001d036617_P001	Maize	nucleus	68.95	68.95
Os04t0516200-01	Rice	nucleus	45.85	62.87
PGSC0003DMT400054474	Potato	plastid	39.71	62.86
GSMUA_Achr9P30540_001	Banana	nucleus	41.52	62.16
Os10t0478000-01	Rice	nucleus	45.13	61.27
Os02t0623400-00	Rice	nucleus	46.21	61.24
Solyc02g069510.1.1	Tomato	nucleus	39.71	60.77
GSMUA_Achr4P31900_001	Banana	nucleus	40.43	59.57
GSMUA_Achr5P00260_001	Banana	nucleus	43.68	59.31
GSMUA_AchrUn_...	Banana	nucleus	44.4	59.13
Os01t0828900-00	Rice	nucleus, plastid	44.4	58.02
GSMUA_Achr11P...	Banana	nucleus	44.04	54.95
Os05t0472000-00	Rice	nucleus	45.49	52.94
Os02t0811000-01	Rice	nucleus	47.29	52.82
KRH58368	Soybean	nucleus	44.4	52.12
KRH42251	Soybean	plastid	44.4	49.8
Os05t0347400-01	Rice	nucleus	46.93	45.77
Os07t0139300-01	Rice	nucleus	42.6	42.75
Os08t0248000-00	Rice	nucleus	28.88	39.6

Protein Annotations

MapMan:35.1	EntrezGene:4341811	EMBL:AB512491	EMBL:AK068794	InterPro:ALOG_dom	ProteinID:BAD46009.1
ProteinID:BAD46286.1	ProteinID:BAF20249.1	ProteinID:BAS99087.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009299	GO:GO:0009416	GO:GO:0009628	GO:GO:0009653	GO:GO:0009987	GO:GO:0090698
InterPro:IPR006936	EnsemblPlantsGene:Os06g0672400	EnsemblPlants:Os06t0672400-01	PFAM:PF04852	PFscan:PS51697	PANTHER:PTHR31165
PANTHER:PTHR31165:SF5	UniProt:Q652I1	UniParc:UPI000043A48B	RefSeq:XP_015641748.1	SEG:seg	:

Description

G1 LIKE PROTEIN 2Protein of unknown function DUF640 domain containing protein. (Os06t0672400-01)

Coordinates

chr6:-:27904696..27906541

Molecular Weight (calculated)

29167.1 Da

IEP (calculated)

9.557

GRAVY (calculated)

-0.639

Length

277 amino acids

Sequence
(BLAST)

001: MQGGGGGDSS GGGGGEAPRP SRYESQKRRD WHTFGQYLRN HRPPLELSRC SGAHVLEFLR YLDQFGKTKV HAAGCPFFGH PSPPAPCPCP LRQAWGSLDA
101: LVGRLRAAFE EHGGRPEANP FGARAVRLYL REVRDSQAKA RGIAYEKKRR KRPPTSSSSS QAAAAAAAAT SPASPAASPT PPPPPPTERS ADVRPMPPEG
201: HFFIPHPHFM HGHFLVPGGD ADHHHQVSNA GNGGNTNTNT NTNTGGGGGN GDEMAVAMAA VAEAHAAGCM LPLSVFN

Best Arabidopsis Sequence Match ( AT2G31160.1 )
(BLAST)

001: MDMIPQLMEG SSAYGGVTNL NIISNNSSSV TGATGGEATQ PLSSSSSPSA NSSRYENQKR RDWNTFGQYL RNHRPPLSLS RCSGAHVLEF LRYLDQFGKT
101: KVHTNICHFY GHPNPPAPCP CPLRQAWGSL DALIGRLRAA FEENGGKPET NPFGARAVRL YLREVRDMQS KARGVSYEKK KRKRPLPSSS TSSSSAVASH
201: QQFQMLPGTS STTQLKFEK

Arabidopsis Description

LSH3Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 [Source:UniProtKB/Swiss-Prot;Acc:O82268]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.