Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 7
- nucleus 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400054474 | Potato | plastid | 92.82 | 96.0 |
| Solyc09g025280.1.1 | Tomato | nucleus | 58.01 | 61.4 |
| Solyc07g062470.2.1 | Tomato | nucleus | 46.41 | 57.14 |
| Os02t0166800-01 | Rice | nucleus | 60.22 | 57.07 |
| Solyc09g090180.1.1 | Tomato | plastid | 62.98 | 54.81 |
| Solyc04g009980.2.1 | Tomato | nucleus, plastid | 53.04 | 53.33 |
| Solyc10g008000.1.1 | Tomato | nucleus | 50.28 | 51.12 |
| Solyc06g083860.2.1 | Tomato | nucleus | 59.67 | 49.54 |
| Solyc02g076820.2.1 | Tomato | plastid | 52.49 | 49.48 |
| Solyc05g055020.2.1 | Tomato | nucleus | 56.91 | 48.82 |
| Solyc06g082210.1.1 | Tomato | nucleus | 59.67 | 48.65 |
| KRH58368 | Soybean | nucleus | 62.43 | 47.88 |
| Solyc12g014260.1.1 | Tomato | nucleus | 54.14 | 47.8 |
| GSMUA_Achr4P31900_001 | Banana | nucleus | 49.17 | 47.34 |
| GSMUA_Achr9P30540_001 | Banana | nucleus | 48.07 | 47.03 |
| KRH42251 | Soybean | plastid | 62.98 | 46.15 |
| Solyc10g007310.1.1 | Tomato | plastid | 53.59 | 45.54 |
| Zm00001d015342_P001 | Maize | nucleus | 61.88 | 45.34 |
| GSMUA_Achr5P00260_001 | Banana | nucleus | 50.83 | 45.1 |
| GSMUA_AchrUn_... | Banana | nucleus | 50.28 | 43.75 |
| TraesCS6D01G129400.1 | Wheat | nucleus | 62.43 | 43.63 |
| TraesCS6A01G139700.1 | Wheat | nucleus | 62.43 | 43.63 |
| TraesCS6B01G168300.1 | Wheat | nucleus, plastid | 62.43 | 43.46 |
| EES04579 | Sorghum | nucleus | 61.33 | 43.02 |
| GSMUA_Achr11P... | Banana | nucleus | 51.93 | 42.34 |
| Zm00001d046998_P001 | Maize | nucleus | 62.43 | 40.79 |
| TraesCS7B01G367400.1 | Wheat | nucleus | 60.22 | 40.67 |
| TraesCS7A01G466000.1 | Wheat | nucleus | 60.22 | 40.67 |
| HORVU7Hr1G106960.2 | Barley | nucleus | 60.22 | 40.52 |
| TraesCS7D01G453600.1 | Wheat | nucleus | 59.67 | 40.3 |
| OQU76862 | Sorghum | nucleus | 61.88 | 39.72 |
| KXG34092 | Sorghum | nucleus | 61.88 | 39.72 |
| Os06t0672400-01 | Rice | nucleus | 60.77 | 39.71 |
| Zm00001d036617_P001 | Maize | nucleus | 60.77 | 39.71 |
| HORVU2Hr1G060890.2 | Barley | nucleus, plastid | 50.28 | 35.0 |
| Zm00001d018775_P001 | Maize | nucleus | 48.62 | 34.38 |
| TraesCS2B01G267400.1 | Wheat | nucleus | 48.07 | 33.85 |
| TraesCS2D01G255200.1 | Wheat | nucleus | 48.62 | 33.85 |
| TraesCS2A01G254700.1 | Wheat | nucleus | 48.07 | 33.46 |
| Os07t0139300-01 | Rice | nucleus | 49.72 | 32.61 |
| EER97956 | Sorghum | mitochondrion, nucleus | 50.28 | 32.04 |
| Os08t0248000-00 | Rice | nucleus | 30.39 | 27.23 |
Protein Annotations
| MapMan:35.1 | InterPro:ALOG_dom | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009299 | GO:GO:0009416 |
| GO:GO:0009628 | GO:GO:0009987 | InterPro:IPR006936 | UniProt:K4B7T3 | PFAM:PF04852 | PFscan:PS51697 |
| PANTHER:PTHR31165 | PANTHER:PTHR31165:SF36 | EnsemblPlantsGene:Solyc02g069510.1 | EnsemblPlants:Solyc02g069510.1.1 | UniParc:UPI00027680C7 | SEG:seg |
Description
No Description!
Coordinates
chr2:-:39385199..39385744
Molecular Weight (calculated)
20335.3 Da
IEP (calculated)
10.237
GRAVY (calculated)
-0.593
Length
181 amino acids
Sequence
(BLAST)
(BLAST)
001: MLDVYSTINS VSQNFSLSSA PAPTLPLPPP SSPPTVSRYE LQKRRDWNTF GQYLRNHKPP LILARCSGAN ILEFLKYLDQ FGKTKVHSCN CPFFGDPHPP
101: APCNCPLKQA WGSLDALIGR LRAAFEENGG RTETNPFGAR AVRLYLKEVR DTQAKARGIA YEKKKRRNIK QRISSTINNC D
101: APCNCPLKQA WGSLDALIGR LRAAFEENGG RTETNPFGAR AVRLYLKEVR DTQAKARGIA YEKKKRRNIK QRISSTINNC D
001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
Arabidopsis Description
LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.