CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018775_P001	Maize	nucleus	78.17	86.72
TraesCS2A01G254700.1	Wheat	nucleus	55.28	60.38
HORVU2Hr1G060890.2	Barley	nucleus, plastid	55.28	60.38
TraesCS2D01G255200.1	Wheat	nucleus	54.58	59.62
TraesCS2B01G267400.1	Wheat	nucleus	53.87	59.53
Os07t0139300-01	Rice	nucleus	57.75	59.42
EES11114	Sorghum	nucleus	37.68	53.77
OQU83235	Sorghum	cytosol	32.04	51.7
PGSC0003DMT400054474	Potato	plastid	31.69	51.43
KXG30661	Sorghum	nucleus	37.32	50.96
Solyc02g069510.1.1	Tomato	nucleus	32.04	50.28
GSMUA_Achr9P30540_001	Banana	nucleus	32.75	50.27
GSMUA_Achr5P00260_001	Banana	nucleus	35.92	50.0
GSMUA_Achr4P31900_001	Banana	nucleus	33.1	50.0
GSMUA_AchrUn_...	Banana	nucleus	35.92	49.04
KXG38327	Sorghum	nucleus	38.03	48.43
OQU87784	Sorghum	nucleus	36.62	48.37
GSMUA_Achr11P...	Banana	nucleus	36.27	46.4
EES05986	Sorghum	nucleus	40.14	45.42
KRH58368	Soybean	nucleus	36.62	44.07
EES04579	Sorghum	nucleus	39.79	43.8
KRH42251	Soybean	plastid	36.62	42.11
KXG34092	Sorghum	nucleus	41.2	41.49
OQU76862	Sorghum	nucleus	41.2	41.49
EES18364	Sorghum	nucleus	37.32	41.25
EES19345	Sorghum	nucleus, plastid	37.68	32.92

Protein Annotations

MapMan:35.1	EntrezGene:8086394	InterPro:ALOG_dom	UniProt:C5X9F3	EnsemblPlants:EER97956	ProteinID:EER97956
ProteinID:EER97956.1	GO:GO:0000003	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009299
GO:GO:0009416	GO:GO:0009628	GO:GO:0009653	GO:GO:0009791	GO:GO:0009908	GO:GO:0009909
GO:GO:0009987	GO:GO:0048449	GO:GO:0090698	InterPro:IPR006936	PFAM:PF04852	PFscan:PS51697
PANTHER:PTHR31165	PANTHER:PTHR31165:SF5	EnsemblPlantsGene:SORBI_3002G029700	unigene:Sbi.21646	UniParc:UPI0001A8407D	RefSeq:XP_002461435.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:2757110..2757964

Molecular Weight (calculated)

30532.5 Da

IEP (calculated)

10.612

GRAVY (calculated)

-0.332

Length

284 amino acids

Sequence
(BLAST)

001: MSTSGGAGAR SWSPPRRASR YESQKRRDWH TFTRYLAAHR PPLELCRCSG AHVLEFLRYL DRFGKTRVHA PLCAAYGGGG GGPALVAAAP CQCPLRQAWG
101: SLDALVGRLR AAFEERHGAR GSGTIWTSSQ SQSQSQQPAV VDGDAANPFA ARAVRLYLRD VRDAQSRARG ISYSRKKKKR SKQQDGAAAA AAGCARPHVN
201: GATSLMHAAA PPPAPPPPPP PPPPPPYCLA GVPFEFCDYG TVLGGVTANG APGFYLPSLF NTFGKLLIIY LLRSKTYYLF ISLR

Best Arabidopsis Sequence Match ( AT1G07090.1 )
(BLAST)

001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP

Arabidopsis Description

LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.