CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010507_P001	Maize	nucleus, plastid	83.69	86.08
Zm00001d038016_P001	Maize	extracellular	78.46	84.72
TraesCS1D01G224100.1	Wheat	nucleus	65.23	74.65
TraesCS1B01G235800.1	Wheat	nucleus	64.92	74.56
OQU83235	Sorghum	cytosol	40.31	74.43
TraesCS1A01G222500.1	Wheat	nucleus	64.31	73.59
HORVU1Hr1G060250.1	Barley	nucleus	63.38	72.03
Os05t0347400-01	Rice	nucleus	60.62	69.37
OQU87784	Sorghum	nucleus	45.23	68.37
Bra018337.1-P	Field mustard	cytosol	34.15	67.27
CDY10712	Canola	cytosol, nucleus, plastid	33.85	66.67
CDY32697	Canola	nucleus	36.0	66.1
CDY59510	Canola	nucleus	36.62	65.75
Bra020365.1-P	Field mustard	nucleus	36.62	65.75
CDY32977	Canola	nucleus, plastid	36.92	65.57
Bra002642.1-P	Field mustard	nucleus, plastid	36.62	65.03
AT1G07090.1	Thale cress	nucleus	39.08	64.8
CDY10247	Canola	nucleus, plastid	39.38	64.65
CDY06675	Canola	nucleus, plastid	39.38	64.65
CDY61050	Canola	nucleus	36.31	64.48
AT5G58500.1	Thale cress	nucleus	36.0	64.29
Bra015551.1-P	Field mustard	nucleus, plastid	39.08	64.14
KRH17088	Soybean	nucleus	42.77	63.76
CDY59064	Canola	nucleus	38.46	63.13
CDY02038	Canola	cytosol	31.69	62.8
Bra031552.1-P	Field mustard	nucleus	38.15	62.63
EES11114	Sorghum	nucleus	38.15	62.31
CDX94980	Canola	nucleus	37.85	62.12
CDY09940	Canola	nucleus	37.85	62.12
CDY20312	Canola	nucleus	37.85	62.12
CDY52287	Canola	nucleus	37.85	62.12
KRH72732	Soybean	nucleus	41.54	61.64
KXG30661	Sorghum	nucleus	39.38	61.54
PGSC0003DMT400078091	Potato	nucleus	41.85	60.99
KRG98226	Soybean	nucleus	43.38	60.78
VIT_06s0004g07090.t01	Wine grape	nucleus	43.08	60.61
EES18364	Sorghum	nucleus	47.69	60.31
Solyc06g082210.1.1	Tomato	nucleus	40.92	59.91
GSMUA_Achr5P07420_001	Banana	nucleus	37.85	58.02
KRH30185	Soybean	nucleus	41.85	57.87
Bra002644.1-P	Field mustard	cytosol, nucleus, plastid	31.69	55.08
KXG38327	Sorghum	nucleus	36.92	53.81
CDY32978	Canola	cytosol, nucleus, plastid	30.77	53.48
EES05986	Sorghum	nucleus	38.15	49.4
EES04579	Sorghum	nucleus	36.62	46.12
KXG34092	Sorghum	nucleus	37.54	43.26
OQU76862	Sorghum	nucleus	37.54	43.26
GSMUA_Achr9P18050_001	Banana	nucleus	34.77	39.79
EER97956	Sorghum	mitochondrion, nucleus	32.92	37.68

Protein Annotations

MapMan:35.1	EntrezGene:8061327	InterPro:ALOG_dom	UniProt:C5YWA4	EnsemblPlants:EES19345	ProteinID:EES19345
ProteinID:EES19345.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009299	GO:GO:0009416	GO:GO:0009628
GO:GO:0009987	InterPro:IPR006936	PFAM:PF04852	PFscan:PS51697	PANTHER:PTHR31165	PANTHER:PTHR31165:SF6
EnsemblPlantsGene:SORBI_3009G102600	UniParc:UPI0001A88AAB	RefSeq:XP_002440915.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr9:-:41081738..41088543

Molecular Weight (calculated)

33386.2 Da

IEP (calculated)

7.941

GRAVY (calculated)

-0.781

Length

325 amino acids

Sequence
(BLAST)

001: MEPGPDAPAG GGGTSSSAPA ETGPSSSSAA AAAAASSSSN RQQAAEQEAA PQQQAGAQQP QRQQPAAAPP AQPQAQQPQP LAQQPPPPPP PPAGLSRYES
101: QKRRDWNTFL QYLRNHKPPL TLARCSGAHV IEFLRYLDQF GKTKVHAEGC AYFGQPNPPA PCACPLRQAW GSLDALIGRL RAAYEESGGR PESNPFAAKA
201: VRIYLRDVRE AQAKARGIPY EKKKRKRGSA AAPPVAPPPV VTAGTTSGAA GGEEEEDDDD EPSPSAAGER PQQQTTTPAS ASASAPPPAA STSSASASSS
301: TAATATATVT TTTTRKEEEG SAPSS

Best Arabidopsis Sequence Match ( AT5G58500.1 )
(BLAST)

001: MEGETAAKAA ASSSSSPSRY ESQKRRDWNT FLQYLRNHKP PLNLSRCSGA HVLEFLKYLD QFGKTKVHAT ACPFFGQPNP PSQCTCPLKQ AWGSLDALIG
101: RLRAAFEEIG GGLPESNPFA AKAVRIYLKE VRQTQAKARG IPYDKKKRKR PHTDTATPIA GDGDDAEGSG GAALVVTAAT TV

Arabidopsis Description

LSH5LSH5 [Source:UniProtKB/TrEMBL;Acc:A0A178U8N9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.