Factsheet for Bra002644.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32978	Canola	cytosol, nucleus, plastid	96.26	96.26
Bra020365.1-P	Field mustard	nucleus	63.1	65.19
Bra002642.1-P	Field mustard	nucleus, plastid	63.64	65.03
AT5G58500.1	Thale cress	nucleus	61.5	63.19
Bra004711.1-P	Field mustard	nucleus	48.66	54.49
Bra018337.1-P	Field mustard	cytosol	47.59	53.94
Bra023738.1-P	Field mustard	plastid	49.73	52.84
KRH72732	Soybean	nucleus	61.5	52.51
Bra016865.1-P	Field mustard	nucleus	48.66	51.7
Bra000269.1-P	Field mustard	nucleus	48.66	51.41
KRH17088	Soybean	nucleus	59.89	51.38
Bra031552.1-P	Field mustard	nucleus	54.01	51.01
OQU83235	Sorghum	cytosol	47.59	50.57
Bra015551.1-P	Field mustard	nucleus, plastid	53.48	50.51
Bra001109.1-P	Field mustard	nucleus, plastid	50.27	49.47
Bra014935.1-P	Field mustard	plastid	52.41	49.25
Bra020610.1-P	Field mustard	nucleus, plastid	50.27	49.21
Bra036134.1-P	Field mustard	nucleus, plastid	50.27	48.96
Bra009997.1-P	Field mustard	plastid	50.27	48.96
PGSC0003DMT400078091	Potato	nucleus	57.75	48.43
Solyc06g082210.1.1	Tomato	nucleus	57.22	48.2
Bra040188.1-P	Field mustard	nucleus, plastid	50.27	47.72
VIT_06s0004g07090.t01	Wine grape	nucleus	58.82	47.62
KRH30185	Soybean	nucleus	59.36	47.23
Bra018263.1-P	Field mustard	nucleus	54.01	46.98
Bra021707.1-P	Field mustard	nucleus	53.48	46.08
Bra021995.1-P	Field mustard	nucleus	44.38	45.86
KRG98226	Soybean	nucleus	56.68	45.69
Bra021000.1-P	Field mustard	nucleus, plastid	45.99	44.56
Bra013330.1-P	Field mustard	nucleus	45.45	43.37
Bra035066.1-P	Field mustard	nucleus	43.85	43.16
Bra008382.1-P	Field mustard	nucleus	43.85	42.93
GSMUA_Achr7P18300_001	Banana	nucleus	43.85	39.81
Os05t0347400-01	Rice	nucleus	58.82	38.73
TraesCS1B01G235800.1	Wheat	nucleus	57.22	37.81
TraesCS1D01G224100.1	Wheat	nucleus	57.22	37.68
TraesCS1A01G222500.1	Wheat	nucleus	57.22	37.68
GSMUA_Achr6P08720_001	Banana	nucleus	39.57	37.56
HORVU1Hr1G060250.1	Barley	nucleus	56.68	37.06
Bra003637.1-P	Field mustard	nucleus	30.48	35.62
Zm00001d038016_P001	Maize	extracellular	56.68	35.22
Zm00001d010507_P001	Maize	nucleus, plastid	54.55	32.28
EES19345	Sorghum	nucleus, plastid	55.08	31.69
Bra040137.1-P	Field mustard	nucleus, plastid	49.73	31.31

Protein Annotations

EnsemblPlants:Bra002644.1	EnsemblPlants:Bra002644.1-P	EnsemblPlantsGene:Bra002644	InterPro:ALOG_dom	InterPro:IPR006936	PANTHER:PTHR31165
PANTHER:PTHR31165:SF6	PFAM:PF04852	PFscan:PS51697	SEG:seg	UniParc:UPI0002543743	UniProt:M4CEL3
MapMan:35.1	:	:	:	:	:

Description

AT5G58500 (E=2e-064) LSH5 | LSH5 (LIGHT SENSITIVE HYPOCOTYLS 5)

Coordinates

chrA10:-:8409932..8410495

Molecular Weight (calculated)

20062.0 Da

IEP (calculated)

10.157

GRAVY (calculated)

-0.370

Length

187 amino acids

Sequence
(BLAST)

001: MDGETAAAAK KAVATVASST ASPSRYEAQK RRDWDTFVKY LKNREPPLCQ CRCSGAHVIE FLKYLDQFGK TKVHVAACPF FGEPNPPAQC TCPLRQAWGS
101: LDSLVGRQRA AFEDIGGGLP ESNPFAAKVV SIYLKEVREA QGKARGIPHG KKKWKRPRVA KATLNADDGG GGRGSGVAAL VVSATMV

Best Arabidopsis Sequence Match ( AT5G58500.1 )
(BLAST)

001: MEGETAAKAA ASSSSSPSRY ESQKRRDWNT FLQYLRNHKP PLNLSRCSGA HVLEFLKYLD QFGKTKVHAT ACPFFGQPNP PSQCTCPLKQ AWGSLDALIG
101: RLRAAFEEIG GGLPESNPFA AKAVRIYLKE VRQTQAKARG IPYDKKKRKR PHTDTATPIA GDGDDAEGSG GAALVVTAAT TV

Arabidopsis Description

LSH5LSH5 [Source:UniProtKB/TrEMBL;Acc:A0A178U8N9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.