Factsheet for Bra035066.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87432	Canola	nucleus	100.0	100.0
CDX88480	Canola	nucleus	93.68	96.22
AT1G78815.1	Thale cress	nucleus	92.63	90.26
Bra008382.1-P	Field mustard	nucleus	88.95	88.48
Bra003637.1-P	Field mustard	nucleus	65.26	77.5
Bra016865.1-P	Field mustard	nucleus	57.37	61.93
KRH27347	Soybean	nucleus	59.47	61.41
Bra004711.1-P	Field mustard	nucleus	53.68	61.08
Bra000269.1-P	Field mustard	nucleus	56.84	61.02
KRH21973	Soybean	nucleus	61.05	59.79
PGSC0003DMT400039811	Potato	nucleus	62.63	58.05
Solyc12g014260.1.1	Tomato	nucleus	62.11	57.56
Bra018337.1-P	Field mustard	cytosol	48.95	56.36
Bra023738.1-P	Field mustard	plastid	51.05	55.11
Bra021000.1-P	Field mustard	nucleus, plastid	55.79	54.92
Bra013330.1-P	Field mustard	nucleus	55.79	54.08
Bra021995.1-P	Field mustard	nucleus	51.05	53.59
VIT_19s0014g01350.t01	Wine grape	nucleus	61.05	52.73
Bra020610.1-P	Field mustard	nucleus, plastid	50.53	50.26
Bra020365.1-P	Field mustard	nucleus	47.37	49.72
Bra001109.1-P	Field mustard	nucleus, plastid	49.47	49.47
Bra014935.1-P	Field mustard	plastid	51.58	49.25
Bra002642.1-P	Field mustard	nucleus, plastid	46.84	48.63
Bra036134.1-P	Field mustard	nucleus, plastid	48.95	48.44
Bra009997.1-P	Field mustard	plastid	48.95	48.44
Bra015551.1-P	Field mustard	nucleus, plastid	49.47	47.47
Bra031552.1-P	Field mustard	nucleus	48.42	46.46
Bra040188.1-P	Field mustard	nucleus, plastid	47.89	46.19
Bra002644.1-P	Field mustard	cytosol, nucleus, plastid	43.16	43.85
Bra021707.1-P	Field mustard	nucleus	49.47	43.32
Bra018263.1-P	Field mustard	nucleus	48.95	43.26
Bra040137.1-P	Field mustard	nucleus, plastid	48.95	31.31

Protein Annotations

EnsemblPlants:Bra035066.1	EnsemblPlants:Bra035066.1-P	EnsemblPlantsGene:Bra035066	InterPro:ALOG_dom	InterPro:IPR006936	PANTHER:PTHR31165
PANTHER:PTHR31165:SF37	PFAM:PF04852	PFscan:PS51697	SEG:seg	UniParc:UPI0002541C65	UniProt:M4F1W9
MapMan:35.1	:	:	:	:	:

Description

AT1G78815 (E=1e-075) LSH7 | LSH7 (LIGHT SENSITIVE HYPOCOTYLS 7)

Coordinates

chrA07:-:22005774..22006346

Molecular Weight (calculated)

20983.9 Da

IEP (calculated)

10.568

GRAVY (calculated)

-0.897

Length

190 amino acids

Sequence
(BLAST)

001: MASPSNKGKG ITEGSSSQSQ PQPQPQAQPQ PLPNPPALSR YESQKRRDWN TFCQYLRNQQ PPVHISQCGS NHILDFLQYL DQFGKTKVHV HGCVFFGQVE
101: PAGQCNCPLK QAWGSLDALI GRLRAAYEEN GGLPERNPFA GGGIRVFLRE VRDSQAKARG VPYKKRKKKK RNPMKSGHGT TGTSSSNLPS

Best Arabidopsis Sequence Match ( AT1G78815.1 )
(BLAST)

001: MASHSNKGKG IAEGSSQPQS QPQPQPHQPQ SPPNPPALSR YESQKRRDWN TFCQYLRNQQ PPVHISQCGS NHILDFLQYL DQFGKTKVHI HGCVFFGQVE
101: PAGQCNCPLK QAWGSLDALI GRLRAAFEEN GGLPERNPFA GGGIRVFLRE VRDSQAKARG VPYKKRKKRK KRNPMKSHDG EDGTTGTSSS SNLAS

Arabidopsis Description

LSH7Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVA0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.