Factsheet for Bra040188.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42932	Canola	nucleus, plastid	98.98	98.98
CDY49331	Canola	nucleus, plastid	98.48	98.98
AT3G04510.1	Thale cress	nucleus, plastid	91.88	90.05
Bra001109.1-P	Field mustard	nucleus, plastid	83.25	86.32
Bra020610.1-P	Field mustard	nucleus, plastid	78.17	80.63
Bra009997.1-P	Field mustard	plastid	76.65	78.65
Bra036134.1-P	Field mustard	nucleus, plastid	76.14	78.12
KRH34151	Soybean	plastid	59.9	67.05
GSMUA_Achr11P...	Banana	nucleus	31.98	67.02
Zm00001d025863_P001	Maize	nucleus	53.81	63.1
Bra023738.1-P	Field mustard	plastid	56.35	63.07
KRG92633	Soybean	nucleus	60.41	62.63
VIT_14s0036g00540.t01	Wine grape	plastid	60.41	62.3
KRG97044	Soybean	plastid	57.87	62.3
PGSC0003DMT400060169	Potato	nucleus, plastid	64.97	61.24
KRH68792	Soybean	plastid	56.85	60.87
Solyc05g055020.2.1	Tomato	nucleus	64.97	60.66
Solyc04g009980.2.1	Tomato	nucleus, plastid	55.33	60.56
Bra014935.1-P	Field mustard	plastid	59.9	59.3
Bra018337.1-P	Field mustard	cytosol	49.24	58.79
PGSC0003DMT400029945	Potato	nucleus	54.31	58.47
GSMUA_Achr5P18640_001	Banana	nucleus	49.24	56.4
Bra004711.1-P	Field mustard	nucleus	47.21	55.69
EES11114	Sorghum	nucleus	55.84	55.28
Bra040137.1-P	Field mustard	nucleus, plastid	83.25	55.22
Zm00001d003057_P001	Maize	nucleus	55.84	55.0
Bra018263.1-P	Field mustard	nucleus	59.9	54.88
TraesCS6B01G256500.1	Wheat	nucleus	55.33	54.5
TraesCS6D01G209700.1	Wheat	nucleus	55.84	54.46
TraesCS6A01G225000.1	Wheat	nucleus	55.84	54.46
Bra021707.1-P	Field mustard	nucleus	59.9	54.38
GSMUA_Achr5P03870_001	Banana	nucleus	47.72	54.34
HORVU2Hr1G089190.1	Barley	nucleus	54.82	54.27
TraesCS2D01G378900.1	Wheat	nucleus	55.33	54.23
HORVU6Hr1G058340.2	Barley	nucleus	55.84	53.92
GSMUA_Achr5P14570_001	Banana	nucleus	47.21	53.76
TraesCS2B01G399800.1	Wheat	nucleus	54.82	53.73
Bra020365.1-P	Field mustard	nucleus	49.24	53.59
Os04t0516200-01	Rice	nucleus	54.82	53.47
Zm00001d051143_P001	Maize	nucleus	54.82	53.47
Os10t0478000-01	Rice	nucleus	55.33	53.43
TraesCS2A01G382500.1	Wheat	nucleus	54.31	53.23
GSMUA_Achr4P21940_001	Banana	nucleus	47.21	53.14
Zm00001d017263_P001	Maize	nucleus	54.82	52.94
GSMUA_Achr1P09270_001	Banana	nucleus	46.19	52.91
KXG30661	Sorghum	nucleus	55.84	52.88
Bra016865.1-P	Field mustard	nucleus	47.21	52.84
Bra000269.1-P	Field mustard	nucleus	47.21	52.54
GSMUA_AchrUn_...	Banana	nucleus	40.61	51.95
TraesCS1D01G153700.1	Wheat	nucleus	54.31	51.94
TraesCS1B01G172100.1	Wheat	nucleus	54.31	51.94
Zm00001d014032_P001	Maize	nucleus	55.33	51.9
Bra015551.1-P	Field mustard	nucleus, plastid	51.78	51.52
Os02t0623400-00	Rice	nucleus	54.31	51.2
Zm00001d032696_P001	Maize	nucleus	55.33	51.17
Bra021995.1-P	Field mustard	nucleus	46.7	50.83
Bra002642.1-P	Field mustard	nucleus, plastid	47.21	50.82
GSMUA_Achr1P05650_001	Banana	nucleus	42.13	50.61
Bra002644.1-P	Field mustard	cytosol, nucleus, plastid	47.72	50.27
GSMUA_Achr4P28760_001	Banana	nucleus	46.19	49.73
Bra031552.1-P	Field mustard	nucleus	49.75	49.49
Bra021000.1-P	Field mustard	nucleus, plastid	48.22	49.22
KXG38327	Sorghum	nucleus	55.33	48.88
GSMUA_Achr6P36540_001	Banana	nucleus	39.59	48.45
Bra035066.1-P	Field mustard	nucleus	46.19	47.89
HORVU1Hr1G041240.5	Barley	nucleus	54.82	47.58
Bra013330.1-P	Field mustard	nucleus	47.21	47.45
Bra008382.1-P	Field mustard	nucleus	44.67	46.07
Zm00001d051966_P001	Maize	nucleus	56.35	45.12
Zm00001d018433_P001	Maize	nucleus	55.84	44.53
TraesCS1A01G154900.1	Wheat	nucleus	54.31	44.4
EES05986	Sorghum	nucleus	56.35	44.22
Os02t0811000-01	Rice	nucleus	55.33	43.95
TraesCS6B01G414700.1	Wheat	nucleus	55.84	43.65
TraesCS6A01G377300.1	Wheat	nucleus	55.84	43.65
TraesCS6D01G361900.1	Wheat	nucleus	55.84	43.65
HORVU6Hr1G088790.1	Barley	nucleus	54.82	42.19
Bra003637.1-P	Field mustard	nucleus	32.49	40.0

Protein Annotations

EnsemblPlants:Bra040188.1	EnsemblPlants:Bra040188.1-P	EnsemblPlantsGene:Bra040188	InterPro:ALOG_dom	InterPro:IPR006936	PANTHER:PTHR31165
PANTHER:PTHR31165:SF16	PFAM:PF04852	PFscan:PS51697	SEG:seg	UniParc:UPI000253EB97	UniProt:M4FGG0
MapMan:35.1	:	:	:	:	:

Description

AT3G04510 (E=7e-084) LSH2 | LSH2 (LIGHT SENSITIVE HYPOCOTYLS 2)

Coordinates

chrScaffold000191:+:19083..19676

Molecular Weight (calculated)

22329.3 Da

IEP (calculated)

10.321

GRAVY (calculated)

-0.981

Length

197 amino acids

Sequence
(BLAST)

001: MDLISQNHNN KNPNTTLSTQ HASSPPPSSR YENQKRRDWN TFCQYLRNHR PPLSPPSCSG AHVLEFLRYL DQFGKTKVHH QNCAFFGLPN PPAPCPCPLR
101: QAWGSLDALI GRLRAAYEEN GGAPDTSPFG SRSVRIFLRE IRDFQAKSRG VSYEKKRKRV NNKQITQSPS QPPLPPQPLE QQQQGQSMMA NYHHGAT

Best Arabidopsis Sequence Match ( AT3G04510.1 )
(BLAST)

001: MDLISQNHNN RNPNTSLSTQ TPSSFSSPPS SSRYENQKRR DWNTFCQYLR NHHPPLSLAS CSGAHVLDFL RYLDQFGKTK VHHQNCAFFG LPNPPAPCPC
101: PLRQAWGSLD ALIGRLRAAY EENGGAPETS PFGSRSVRIF LREVRDFQAK SRGVSYEKKR KRVNNKQITQ SQPQSQPPLP QQPQQEQGQS MMANYHHGAT
201: Q

Arabidopsis Description

LSH2Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M836]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.