Factsheet for Bra015551.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10247	Canola	nucleus, plastid	99.49	99.49
CDY06675	Canola	nucleus, plastid	98.99	98.99
AT1G07090.1	Thale cress	nucleus	87.88	88.78
Bra031552.1-P	Field mustard	nucleus	85.86	85.86
Bra018337.1-P	Field mustard	cytosol	62.12	74.55
Bra002642.1-P	Field mustard	nucleus, plastid	61.62	66.67
Bra020365.1-P	Field mustard	nucleus	60.1	65.75
Bra023738.1-P	Field mustard	plastid	56.06	63.07
OQU83235	Sorghum	cytosol	52.02	58.52
Bra004711.1-P	Field mustard	nucleus	48.99	58.08
Bra016865.1-P	Field mustard	nucleus	51.01	57.39
Bra021995.1-P	Field mustard	nucleus	52.02	56.91
Bra000269.1-P	Field mustard	nucleus	50.51	56.5
Bra014935.1-P	Field mustard	plastid	55.56	55.28
Bra020610.1-P	Field mustard	nucleus, plastid	52.53	54.45
Bra001109.1-P	Field mustard	nucleus, plastid	51.52	53.68
Bra009997.1-P	Field mustard	plastid	52.02	53.65
Bra036134.1-P	Field mustard	nucleus, plastid	52.02	53.65
Bra002644.1-P	Field mustard	cytosol, nucleus, plastid	50.51	53.48
Bra021000.1-P	Field mustard	nucleus, plastid	51.01	52.33
Bra040188.1-P	Field mustard	nucleus, plastid	51.52	51.78
Bra013330.1-P	Field mustard	nucleus	51.01	51.53
Bra018263.1-P	Field mustard	nucleus	54.55	50.23
Bra021707.1-P	Field mustard	nucleus	54.55	49.77
Bra035066.1-P	Field mustard	nucleus	47.47	49.47
Bra008382.1-P	Field mustard	nucleus	44.44	46.07
TraesCS1B01G235800.1	Wheat	nucleus	65.66	45.94
Os05t0347400-01	Rice	nucleus	65.66	45.77
TraesCS1A01G222500.1	Wheat	nucleus	65.66	45.77
TraesCS1D01G224100.1	Wheat	nucleus	65.66	45.77
HORVU1Hr1G060250.1	Barley	nucleus	64.65	44.76
Bra003637.1-P	Field mustard	nucleus	33.84	41.88
Zm00001d038016_P001	Maize	extracellular	62.12	40.86
Zm00001d010507_P001	Maize	nucleus, plastid	62.63	39.24
EES19345	Sorghum	nucleus, plastid	64.14	39.08
Bra040137.1-P	Field mustard	nucleus, plastid	50.51	33.67

Protein Annotations

EnsemblPlants:Bra015551.1	EnsemblPlants:Bra015551.1-P	EnsemblPlantsGene:Bra015551	InterPro:ALOG_dom	InterPro:IPR006936	PANTHER:PTHR31165
PANTHER:PTHR31165:SF6	PFAM:PF04852	PFscan:PS51697	SEG:seg	UniParc:UPI0002544D99	UniProt:M4DGC8
MapMan:35.1	:	:	:	:	:

Description

AT1G07090 (E=7e-087) LSH6 | LSH6 (LIGHT SENSITIVE HYPOCOTYLS 6)

Coordinates

chrA10:+:1119806..1120402

Molecular Weight (calculated)

21547.4 Da

IEP (calculated)

9.783

GRAVY (calculated)

-0.764

Length

198 amino acids

Sequence
(BLAST)

001: MESTDSGSQQ HGGDPGPSSV TPSSPPATPP SRYESQKRRD WNTFLQYLKN HKPPLALSRC SGAHVIEFLK YLDQCGKTKV HVATCPYFGH QQPPSPCACP
101: LKQAWGSLDA LIGRLRAAYE EHGGRPDSNP FAARAVRIYL REVRESQAKA RGIPYEKKKR KRAPTVTTAR IDVAPSRQSE GGGGCNVSDP SVAEAVPP

Best Arabidopsis Sequence Match ( AT1G07090.1 )
(BLAST)

001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP

Arabidopsis Description

LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.