Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY52287 | Canola | nucleus | 89.29 | 88.38 |
| CDY20312 | Canola | nucleus | 89.29 | 88.38 |
| CDY10247 | Canola | nucleus, plastid | 89.29 | 88.38 |
| CDY09940 | Canola | nucleus | 89.29 | 88.38 |
| CDX94980 | Canola | nucleus | 89.29 | 88.38 |
| CDY06675 | Canola | nucleus, plastid | 88.78 | 87.88 |
| Bra015551.1-P | Field mustard | nucleus, plastid | 88.78 | 87.88 |
| CDY59064 | Canola | nucleus | 87.76 | 86.87 |
| Bra031552.1-P | Field mustard | nucleus | 87.24 | 86.36 |
| AT5G58500.1 | Thale cress | nucleus | 61.22 | 65.93 |
| OQU83235 | Sorghum | cytosol | 54.08 | 60.23 |
| AT2G42610.1 | Thale cress | nucleus | 52.04 | 57.63 |
| AT3G23290.2 | Thale cress | plastid | 56.63 | 56.92 |
| AT5G28490.1 | Thale cress | nucleus, plastid | 53.06 | 54.74 |
| AT1G16910.1 | Thale cress | cytosol | 44.39 | 53.05 |
| AT4G18610.1 | Thale cress | nucleus | 51.53 | 52.88 |
| AT2G31160.1 | Thale cress | nucleus | 57.14 | 51.14 |
| AT3G04510.1 | Thale cress | nucleus, plastid | 52.04 | 50.75 |
| AT1G78815.1 | Thale cress | nucleus | 46.94 | 47.18 |
| TraesCS1B01G235800.1 | Wheat | nucleus | 66.84 | 46.29 |
| TraesCS1A01G222500.1 | Wheat | nucleus | 66.84 | 46.13 |
| TraesCS1D01G224100.1 | Wheat | nucleus | 66.84 | 46.13 |
| Os05t0347400-01 | Rice | nucleus | 66.33 | 45.77 |
| HORVU1Hr1G060250.1 | Barley | nucleus | 66.33 | 45.45 |
| Zm00001d038016_P001 | Maize | extracellular | 64.29 | 41.86 |
| Zm00001d010507_P001 | Maize | nucleus, plastid | 64.29 | 39.87 |
| EES19345 | Sorghum | nucleus, plastid | 64.8 | 39.08 |
Protein Annotations
| MapMan:35.1 | EntrezGene:837220 | UniProt:A0A178WE41 | ProteinID:AAF82211.1 | ProteinID:AEE28076.1 | InterPro:ALOG_dom |
| ArrayExpress:AT1G07090 | EnsemblPlantsGene:AT1G07090 | RefSeq:AT1G07090 | TAIR:AT1G07090 | RefSeq:AT1G07090-TAIR-G | EnsemblPlants:AT1G07090.1 |
| TAIR:AT1G07090.1 | EMBL:AY086869 | EMBL:BT003842 | EMBL:BT020303 | EMBL:BT024584 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009299 | GO:GO:0009416 | GO:GO:0009628 | GO:GO:0009653 |
| GO:GO:0009987 | GO:GO:0090698 | InterPro:IPR006936 | Symbol:LSH6 | RefSeq:NP_563780.1 | ProteinID:OAP16394.1 |
| PFAM:PF04852 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PFscan:PS51697 |
| PANTHER:PTHR31165 | PANTHER:PTHR31165:SF6 | UniProt:Q9LMK2 | UniParc:UPI000000C198 | SEG:seg | : |
Description
LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
Coordinates
chr1:-:2173952..2175038
Molecular Weight (calculated)
21532.4 Da
IEP (calculated)
9.905
GRAVY (calculated)
-0.726
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.