Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 4
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY57088 | Canola | nucleus | 90.87 | 91.71 |
| CDY57087 | Canola | nucleus | 90.87 | 91.71 |
| CDY15426 | Canola | nucleus | 90.41 | 91.24 |
| Bra021707.1-P | Field mustard | nucleus | 90.41 | 91.24 |
| CDY10790 | Canola | nucleus | 89.04 | 90.7 |
| Bra018263.1-P | Field mustard | nucleus | 89.04 | 90.7 |
| CDY24755 | Canola | nucleus, plastid | 88.13 | 89.77 |
| GSMUA_Achr11P... | Banana | nucleus | 33.79 | 78.72 |
| VIT_07s0005g03530.t01 | Wine grape | nucleus | 65.3 | 78.14 |
| Solyc09g025280.1.1 | Tomato | nucleus | 58.9 | 75.44 |
| PGSC0003DMT400026698 | Potato | nucleus | 60.73 | 71.89 |
| AT3G23290.2 | Thale cress | plastid | 63.01 | 70.77 |
| KRH32192 | Soybean | nucleus | 66.21 | 70.05 |
| Zm00001d025863_P001 | Maize | nucleus | 53.42 | 69.64 |
| KRH67397 | Soybean | nucleus | 64.38 | 69.46 |
| KRG95674 | Soybean | nucleus | 64.38 | 69.46 |
| KRH56293 | Soybean | nucleus | 65.75 | 68.25 |
| GSMUA_Achr5P18640_001 | Banana | nucleus | 50.68 | 64.53 |
| PGSC0003DMT400051692 | Potato | nucleus | 61.19 | 64.42 |
| AT5G28490.1 | Thale cress | nucleus, plastid | 55.25 | 63.68 |
| EES11114 | Sorghum | nucleus | 57.08 | 62.81 |
| Zm00001d003057_P001 | Maize | nucleus | 57.08 | 62.5 |
| Solyc06g083860.2.1 | Tomato | nucleus | 61.64 | 61.93 |
| Os04t0516200-01 | Rice | nucleus | 57.08 | 61.88 |
| HORVU2Hr1G089190.1 | Barley | nucleus | 56.16 | 61.81 |
| TraesCS2D01G378900.1 | Wheat | nucleus | 56.62 | 61.69 |
| GSMUA_Achr5P03870_001 | Banana | nucleus | 48.4 | 61.27 |
| TraesCS2A01G382500.1 | Wheat | nucleus | 56.16 | 61.19 |
| GSMUA_Achr4P21940_001 | Banana | nucleus | 48.86 | 61.14 |
| GSMUA_Achr1P09270_001 | Banana | nucleus | 47.95 | 61.05 |
| GSMUA_AchrUn_... | Banana | nucleus | 42.92 | 61.04 |
| TraesCS6B01G256500.1 | Wheat | nucleus | 55.71 | 61.0 |
| AT5G58500.1 | Thale cress | nucleus | 50.68 | 60.99 |
| TraesCS2B01G399800.1 | Wheat | nucleus | 55.71 | 60.7 |
| TraesCS1B01G172100.1 | Wheat | nucleus | 57.08 | 60.68 |
| TraesCS1D01G153700.1 | Wheat | nucleus | 57.08 | 60.68 |
| Zm00001d014032_P001 | Maize | nucleus | 57.99 | 60.48 |
| TraesCS6A01G225000.1 | Wheat | nucleus | 55.71 | 60.4 |
| Zm00001d051143_P001 | Maize | nucleus | 55.71 | 60.4 |
| TraesCS6D01G209700.1 | Wheat | nucleus | 55.71 | 60.4 |
| GSMUA_Achr5P14570_001 | Banana | nucleus | 47.49 | 60.12 |
| Zm00001d032696_P001 | Maize | nucleus | 58.45 | 60.09 |
| HORVU6Hr1G058340.2 | Barley | nucleus | 55.71 | 59.8 |
| Os10t0478000-01 | Rice | nucleus | 55.71 | 59.8 |
| Zm00001d017263_P001 | Maize | nucleus | 55.25 | 59.31 |
| AT3G04510.1 | Thale cress | nucleus, plastid | 54.34 | 59.2 |
| Os02t0623400-00 | Rice | nucleus | 56.16 | 58.85 |
| AT2G42610.1 | Thale cress | nucleus | 47.49 | 58.76 |
| KXG30661 | Sorghum | nucleus | 55.71 | 58.65 |
| GSMUA_Achr4P28760_001 | Banana | nucleus | 47.95 | 57.38 |
| AT1G07090.1 | Thale cress | nucleus | 51.14 | 57.14 |
| KXG38327 | Sorghum | nucleus | 57.99 | 56.95 |
| HORVU1Hr1G041240.5 | Barley | nucleus | 57.99 | 55.95 |
| GSMUA_Achr1P05650_001 | Banana | nucleus | 40.64 | 54.27 |
| Zm00001d018433_P001 | Maize | nucleus | 60.27 | 53.44 |
| Zm00001d051966_P001 | Maize | nucleus | 59.82 | 53.25 |
| Os02t0811000-01 | Rice | nucleus | 59.82 | 52.82 |
| TraesCS6B01G414700.1 | Wheat | nucleus | 60.27 | 52.38 |
| TraesCS6D01G361900.1 | Wheat | nucleus | 60.27 | 52.38 |
| TraesCS6A01G377300.1 | Wheat | nucleus | 60.27 | 52.38 |
| EES05986 | Sorghum | nucleus | 59.82 | 52.19 |
| GSMUA_Achr6P36540_001 | Banana | nucleus | 38.36 | 52.17 |
| TraesCS1A01G154900.1 | Wheat | nucleus | 57.08 | 51.87 |
| AT1G16910.1 | Thale cress | cytosol | 38.81 | 51.83 |
| HORVU6Hr1G088790.1 | Barley | nucleus | 59.82 | 51.17 |
| AT1G78815.1 | Thale cress | nucleus | 43.38 | 48.72 |
| AT4G18610.1 | Thale cress | nucleus | 42.01 | 48.17 |
Protein Annotations
| MapMan:35.1 | EntrezGene:817672 | ProteinID:AAC63835.1 | ProteinID:AEC08501.1 | InterPro:ALOG_dom | ArrayExpress:AT2G31160 |
| EnsemblPlantsGene:AT2G31160 | RefSeq:AT2G31160 | TAIR:AT2G31160 | RefSeq:AT2G31160-TAIR-G | EnsemblPlants:AT2G31160.1 | TAIR:AT2G31160.1 |
| EMBL:AY056383 | EMBL:AY081705 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009299 | GO:GO:0009416 | GO:GO:0009628 | GO:GO:0009653 | GO:GO:0009791 | GO:GO:0009908 |
| GO:GO:0009987 | GO:GO:0010199 | GO:GO:0010492 | GO:GO:0048441 | GO:GO:0048834 | GO:GO:0090698 |
| InterPro:IPR006936 | Symbol:LSH3 | RefSeq:NP_565716.1 | UniProt:O82268 | PFAM:PF04852 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PFscan:PS51697 |
| PANTHER:PTHR31165 | PANTHER:PTHR31165:SF36 | UniParc:UPI00000AA59D | SEG:seg | : | : |
Description
LSH3Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 [Source:UniProtKB/Swiss-Prot;Acc:O82268]
Coordinates
chr2:+:13277710..13279498
Molecular Weight (calculated)
24124.4 Da
IEP (calculated)
10.415
GRAVY (calculated)
-0.703
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MDMIPQLMEG SSAYGGVTNL NIISNNSSSV TGATGGEATQ PLSSSSSPSA NSSRYENQKR RDWNTFGQYL RNHRPPLSLS RCSGAHVLEF LRYLDQFGKT
101: KVHTNICHFY GHPNPPAPCP CPLRQAWGSL DALIGRLRAA FEENGGKPET NPFGARAVRL YLREVRDMQS KARGVSYEKK KRKRPLPSSS TSSSSAVASH
201: QQFQMLPGTS STTQLKFEK
101: KVHTNICHFY GHPNPPAPCP CPLRQAWGSL DALIGRLRAA FEENGGKPET NPFGARAVRL YLREVRDMQS KARGVSYEKK KRKRPLPSSS TSSSSAVASH
201: QQFQMLPGTS STTQLKFEK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.