Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78877 | Canola | nucleus | 95.29 | 92.86 |
| CDY67351 | Canola | nucleus | 93.72 | 92.75 |
| CDX76510 | Canola | nucleus | 92.67 | 91.71 |
| Bra021000.1-P | Field mustard | nucleus, plastid | 92.15 | 91.19 |
| Bra013330.1-P | Field mustard | nucleus | 92.67 | 90.31 |
| CDY34056 | Canola | nucleus | 91.1 | 90.16 |
| CDY01557 | Canola | nucleus | 89.53 | 89.53 |
| KRH42865 | Soybean | plastid | 59.16 | 67.66 |
| VIT_10s0003g01280.t01 | Wine grape | nucleus | 60.21 | 65.71 |
| AT2G42610.1 | Thale cress | nucleus | 60.21 | 64.97 |
| KRH11015 | Soybean | nucleus | 60.73 | 64.09 |
| KRH21273 | Soybean | nucleus | 60.73 | 64.09 |
| PGSC0003DMT400026433 | Potato | nucleus | 60.21 | 60.21 |
| Solyc02g076820.2.1 | Tomato | plastid | 59.69 | 59.38 |
| AT1G16910.1 | Thale cress | cytosol | 49.21 | 57.32 |
| AT1G78815.1 | Thale cress | nucleus | 56.02 | 54.87 |
| AT5G58500.1 | Thale cress | nucleus | 49.74 | 52.2 |
| AT1G07090.1 | Thale cress | nucleus | 52.88 | 51.53 |
| AT3G23290.2 | Thale cress | plastid | 51.83 | 50.77 |
| AT5G28490.1 | Thale cress | nucleus, plastid | 49.74 | 50.0 |
| AT3G04510.1 | Thale cress | nucleus, plastid | 49.74 | 47.26 |
| AT2G31160.1 | Thale cress | nucleus | 48.17 | 42.01 |
Protein Annotations
| EntrezGene:28720146 | MapMan:35.1 | ProteinID:AEE84068.1 | InterPro:ALOG_dom | ArrayExpress:AT4G18610 | EnsemblPlantsGene:AT4G18610 |
| RefSeq:AT4G18610 | TAIR:AT4G18610 | RefSeq:AT4G18610-TAIR-G | EnsemblPlants:AT4G18610.1 | TAIR:AT4G18610.1 | EMBL:BT010856 |
| EMBL:BT014677 | ProteinID:CAB37446.1 | ProteinID:CAB78863.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009299 | GO:GO:0009416 | GO:GO:0009628 | GO:GO:0009653 | GO:GO:0009987 | GO:GO:0090698 |
| InterPro:IPR006936 | Symbol:LSH9 | RefSeq:NP_001319986.1 | PFAM:PF04852 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0007611 | PO:PO:0009005 | PO:PO:0009046 | PO:PO:0020100 | PO:PO:0020137 | PFscan:PS51697 |
| PANTHER:PTHR31165 | PANTHER:PTHR31165:SF8 | UniProt:Q9SN52 | UniParc:UPI00000A473D | SEG:seg | : |
Description
LSH9Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN52]
Coordinates
chr4:+:10250601..10253148
Molecular Weight (calculated)
21745.7 Da
IEP (calculated)
10.464
GRAVY (calculated)
-1.012
Length
191 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSDRHTPTK DPPDHPSSSS NHHKQPLPPQ PQQPLSRYES QKRRDWNTFV QYLKSQNPPL MMSQFDYTHV LSFLRYLDQF GKTKVHHQAC VFFGQPDPPG
101: PCTCPLKQAW GSLDALIGRL RAAYEEHGGG SPDTNPFANG SIRVHLREVR ESQAKARGIP YRKKKRRKTK NEVVVVKKDV ANSSTPNQSF T
101: PCTCPLKQAW GSLDALIGRL RAAYEEHGGG SPDTNPFANG SIRVHLREVR ESQAKARGIP YRKKKRRKTK NEVVVVKKDV ANSSTPNQSF T
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.