Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 3
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g076820.2.1 | Tomato | plastid | 96.86 | 96.35 |
| VIT_10s0003g01280.t01 | Wine grape | nucleus | 73.3 | 80.0 |
| PGSC0003DMT400052658 | Potato | nucleus | 70.16 | 77.46 |
| KRH42865 | Soybean | plastid | 67.54 | 77.25 |
| KRH21273 | Soybean | nucleus | 70.68 | 74.59 |
| KRH11015 | Soybean | nucleus | 70.16 | 74.03 |
| PGSC0003DMT400027334 | Potato | nucleus | 63.87 | 68.54 |
| PGSC0003DMT400039811 | Potato | nucleus | 67.54 | 62.93 |
| PGSC0003DMT400054899 | Potato | nucleus | 66.49 | 61.35 |
| PGSC0003DMT400018295 | Potato | nucleus | 61.26 | 61.26 |
| AT4G18610.1 | Thale cress | nucleus | 60.21 | 60.21 |
| CDX77619 | Canola | cytosol | 30.89 | 60.2 |
| CDY67351 | Canola | nucleus | 60.73 | 60.1 |
| CDY01557 | Canola | nucleus | 59.69 | 59.69 |
| CDX76510 | Canola | nucleus | 60.21 | 59.59 |
| CDY34056 | Canola | nucleus | 60.21 | 59.59 |
| CDX78877 | Canola | nucleus | 60.73 | 59.18 |
| Bra021000.1-P | Field mustard | nucleus, plastid | 59.69 | 59.07 |
| CDX87760 | Canola | nucleus | 55.5 | 58.89 |
| Bra013330.1-P | Field mustard | nucleus | 59.69 | 58.16 |
| Bra021995.1-P | Field mustard | nucleus | 54.97 | 58.01 |
| CDY06030 | Canola | nucleus | 54.97 | 58.01 |
| PGSC0003DMT400054474 | Potato | plastid | 50.79 | 55.43 |
| PGSC0003DMT400026698 | Potato | nucleus | 53.4 | 55.14 |
| PGSC0003DMT400044213 | Potato | mitochondrion | 58.12 | 54.68 |
| PGSC0003DMT400029945 | Potato | nucleus | 51.31 | 53.55 |
| PGSC0003DMT400051692 | Potato | nucleus | 54.45 | 50.0 |
| PGSC0003DMT400078091 | Potato | nucleus | 54.97 | 47.09 |
| PGSC0003DMT400060169 | Potato | nucleus, plastid | 50.79 | 46.41 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400026433 | EnsemblPlantsGene:PGSC0003DMG400010198 | EntrezGene:102591189 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 |
| PANTHER:PTHR31165:SF8 | PFAM:PF04852 | PFscan:PS51697 | PGSC:PGSC0003DMG400010198 | RefSeq:XP_006362411.1 | SEG:seg |
| UniParc:UPI000294C6D2 | UniProt:M1AN55 | MapMan:35.1 | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400010198]
Coordinates
chr2:+:32166449..32172284
Molecular Weight (calculated)
21156.2 Da
IEP (calculated)
10.275
GRAVY (calculated)
-0.778
Length
191 amino acids
Sequence
(BLAST)
(BLAST)
001: MNPSTIVMTK ELPAGSSRSG GEQLQNNNPA PLSRYESQKR RDWNTFGQYL KNQRPPVSLS QCNCNHVLEF LRYLDQFGKT KVHLHGCVFF GQPDPPAPCT
101: CPLRQAWGSL DALIGRLRAA YEENGGSPEN NPFGNGAIRL YLREVKECQA KARGIPYKKK KKRKLNNNSI KSIGAGAGAG ADQHKNLMQA S
101: CPLRQAWGSL DALIGRLRAA YEENGGSPEN NPFGNGAIRL YLREVKECQA KARGIPYKKK KKRKLNNNSI KSIGAGAGAG ADQHKNLMQA S
001: MSSDRHTPTK DPPDHPSSSS NHHKQPLPPQ PQQPLSRYES QKRRDWNTFV QYLKSQNPPL MMSQFDYTHV LSFLRYLDQF GKTKVHHQAC VFFGQPDPPG
101: PCTCPLKQAW GSLDALIGRL RAAYEEHGGG SPDTNPFANG SIRVHLREVR ESQAKARGIP YRKKKRRKTK NEVVVVKKDV ANSSTPNQSF T
101: PCTCPLKQAW GSLDALIGRL RAAYEEHGGG SPDTNPFANG SIRVHLREVR ESQAKARGIP YRKKKRRKTK NEVVVVKKDV ANSSTPNQSF T
Arabidopsis Description
LSH9Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN52]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.