Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06030 | Canola | nucleus | 95.0 | 94.48 |
| Bra021995.1-P | Field mustard | nucleus | 94.44 | 93.92 |
| CDX77619 | Canola | cytosol | 42.22 | 77.55 |
| CDY67351 | Canola | nucleus | 76.67 | 71.5 |
| CDX78877 | Canola | nucleus | 77.22 | 70.92 |
| CDY01557 | Canola | nucleus | 75.0 | 70.68 |
| CDX76510 | Canola | nucleus | 75.0 | 69.95 |
| CDY34056 | Canola | nucleus | 75.0 | 69.95 |
| KRH42865 | Soybean | plastid | 58.33 | 62.87 |
| VIT_10s0003g01280.t01 | Wine grape | nucleus | 60.56 | 62.29 |
| CDY47983 | Canola | nucleus | 58.33 | 59.66 |
| CDY14848 | Canola | nucleus | 58.33 | 59.32 |
| KRH11015 | Soybean | nucleus | 59.44 | 59.12 |
| KRH21273 | Soybean | nucleus | 58.89 | 58.56 |
| CDY55387 | Canola | nucleus | 57.78 | 58.43 |
| PGSC0003DMT400026433 | Potato | nucleus | 58.89 | 55.5 |
| Solyc02g076820.2.1 | Tomato | plastid | 58.33 | 54.69 |
| CDY02038 | Canola | cytosol | 49.44 | 54.27 |
| CDY10712 | Canola | cytosol, nucleus, plastid | 49.44 | 53.94 |
| CDY06675 | Canola | nucleus, plastid | 57.22 | 52.02 |
| CDY10247 | Canola | nucleus, plastid | 57.22 | 52.02 |
| CDY32697 | Canola | nucleus | 51.11 | 51.98 |
| CDX88480 | Canola | nucleus | 53.33 | 51.89 |
| CDY59510 | Canola | nucleus | 51.11 | 50.83 |
| CDX87432 | Canola | nucleus | 53.33 | 50.53 |
| CDY69731 | Canola | plastid | 53.89 | 49.74 |
| CDY61050 | Canola | nucleus | 50.56 | 49.73 |
| CDY32977 | Canola | nucleus, plastid | 50.56 | 49.73 |
| CDY35523 | Canola | plastid | 53.33 | 49.23 |
| CDX77531 | Canola | plastid | 53.89 | 48.74 |
| CDX85083 | Canola | plastid | 53.89 | 48.74 |
| CDY59064 | Canola | nucleus | 53.33 | 48.48 |
| CDY52287 | Canola | nucleus | 53.33 | 48.48 |
| CDY09940 | Canola | nucleus | 53.33 | 48.48 |
| CDX94980 | Canola | nucleus | 53.33 | 48.48 |
| CDY20312 | Canola | nucleus | 53.33 | 48.48 |
| CDY14588 | Canola | nucleus | 51.11 | 48.42 |
| CDY26881 | Canola | nucleus | 51.11 | 48.17 |
| CDY63294 | Canola | nucleus | 48.89 | 47.83 |
| CDX74186 | Canola | nucleus, plastid | 50.0 | 47.37 |
| CDY30000 | Canola | nucleus, plastid | 50.0 | 47.37 |
| CDY21126 | Canola | nucleus, plastid | 50.0 | 47.37 |
| CDY52479 | Canola | nucleus, plastid | 49.44 | 46.84 |
| CDY57024 | Canola | nucleus, plastid | 49.44 | 46.35 |
| CDX86199 | Canola | plastid | 49.44 | 46.35 |
| CDY05593 | Canola | nucleus, plastid | 48.89 | 46.07 |
| CDY49331 | Canola | nucleus, plastid | 50.0 | 45.92 |
| CDY64755 | Canola | nucleus, plastid | 48.89 | 45.83 |
| CDY42932 | Canola | nucleus, plastid | 50.0 | 45.69 |
| CDY52505 | Canola | nucleus, plastid | 48.33 | 45.55 |
| CDY32978 | Canola | cytosol, nucleus, plastid | 46.11 | 44.38 |
| CDY10790 | Canola | nucleus | 48.33 | 40.47 |
| CDY57087 | Canola | nucleus | 48.33 | 40.09 |
| CDY57088 | Canola | nucleus | 48.33 | 40.09 |
| CDY15426 | Canola | nucleus | 48.33 | 40.09 |
| CDY24755 | Canola | nucleus, plastid | 47.78 | 40.0 |
Protein Annotations
| EnsemblPlants:CDX87760 | EnsemblPlantsGene:GSBRNA2T00146833001 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF8 |
| PFAM:PF04852 | PFscan:PS51697 | ProteinID:CDX87760 | ProteinID:CDX87760.1 | SEG:seg | UniParc:UPI0004EB485F |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaC02g31890D
Coordinates
chrLK031851:+:1039520..1040062
Molecular Weight (calculated)
20230.7 Da
IEP (calculated)
10.049
GRAVY (calculated)
-0.906
Length
180 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSYNTPDEP SSSSNSGHHM PPPVQQQLSR YESQKRRDWN TFLQYLKTLN PPIKISQFDH THVLSFLDYL DQFGKTKVHH QACAFFGQPD PPSPCTCPLK
101: QAWGSLDALI GRLRAAYDEH GGGSSDSNLF GNGSIRIHLR EIRESQAKAR GIPYRKKKKR KKTANDADVI KKDFSNSGGS
101: QAWGSLDALI GRLRAAYDEH GGGSSDSNLF GNGSIRIHLR EIRESQAKAR GIPYRKKKKR KKTANDADVI KKDFSNSGGS
001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
Arabidopsis Description
LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.