Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY32977 | Canola | nucleus, plastid | 93.44 | 93.44 |
| CDY32697 | Canola | nucleus | 85.79 | 88.7 |
| CDY59510 | Canola | nucleus | 86.34 | 87.29 |
| AT5G58500.1 | Thale cress | nucleus | 81.97 | 82.42 |
| CDY10712 | Canola | cytosol, nucleus, plastid | 56.28 | 62.42 |
| CDY52287 | Canola | nucleus | 66.67 | 61.62 |
| CDY20312 | Canola | nucleus | 66.67 | 61.62 |
| CDY09940 | Canola | nucleus | 66.67 | 61.62 |
| CDX94980 | Canola | nucleus | 66.67 | 61.62 |
| CDY02038 | Canola | cytosol | 55.19 | 61.59 |
| CDY59064 | Canola | nucleus | 66.12 | 61.11 |
| CDY10247 | Canola | nucleus, plastid | 66.12 | 61.11 |
| CDY06675 | Canola | nucleus, plastid | 66.12 | 61.11 |
| CDY32978 | Canola | cytosol, nucleus, plastid | 61.75 | 60.43 |
| KRH72732 | Soybean | nucleus | 68.31 | 57.08 |
| CDY47983 | Canola | nucleus | 54.64 | 56.82 |
| CDY14848 | Canola | nucleus | 54.64 | 56.5 |
| CDY69731 | Canola | plastid | 60.11 | 56.41 |
| CDY35523 | Canola | plastid | 59.56 | 55.9 |
| CDX85083 | Canola | plastid | 60.66 | 55.78 |
| CDX77531 | Canola | plastid | 60.11 | 55.28 |
| CDY55387 | Canola | nucleus | 53.55 | 55.06 |
| OQU83235 | Sorghum | cytosol | 52.46 | 54.55 |
| PGSC0003DMT400078091 | Potato | nucleus | 65.57 | 53.81 |
| KRH17088 | Soybean | nucleus | 63.93 | 53.67 |
| Solyc06g082210.1.1 | Tomato | nucleus | 65.03 | 53.6 |
| VIT_06s0004g07090.t01 | Wine grape | nucleus | 67.21 | 53.25 |
| CDX86199 | Canola | plastid | 54.64 | 52.08 |
| CDY57024 | Canola | nucleus, plastid | 54.64 | 52.08 |
| CDY52479 | Canola | nucleus, plastid | 53.55 | 51.58 |
| KRG98226 | Soybean | nucleus | 65.03 | 51.29 |
| CDY10790 | Canola | nucleus | 60.11 | 51.16 |
| CDY63294 | Canola | nucleus | 51.37 | 51.09 |
| CDY64755 | Canola | nucleus, plastid | 53.55 | 51.04 |
| CDY06030 | Canola | nucleus | 50.27 | 50.83 |
| CDY15426 | Canola | nucleus | 60.11 | 50.69 |
| CDX87760 | Canola | nucleus | 49.73 | 50.56 |
| CDX74186 | Canola | nucleus, plastid | 52.46 | 50.53 |
| CDY52505 | Canola | nucleus, plastid | 52.46 | 50.26 |
| CDY05593 | Canola | nucleus, plastid | 52.46 | 50.26 |
| CDY24755 | Canola | nucleus, plastid | 59.02 | 50.23 |
| CDY57087 | Canola | nucleus | 59.56 | 50.23 |
| CDY57088 | Canola | nucleus | 59.56 | 50.23 |
| KRH30185 | Soybean | nucleus | 63.39 | 49.36 |
| CDX77619 | Canola | cytosol | 26.23 | 48.98 |
| CDY30000 | Canola | nucleus, plastid | 50.82 | 48.95 |
| CDY21126 | Canola | nucleus, plastid | 50.82 | 48.95 |
| CDX88480 | Canola | nucleus | 49.18 | 48.65 |
| CDY67351 | Canola | nucleus | 50.82 | 48.19 |
| CDX76510 | Canola | nucleus | 50.82 | 48.19 |
| CDY01557 | Canola | nucleus | 50.27 | 48.17 |
| CDY49331 | Canola | nucleus, plastid | 51.37 | 47.96 |
| CDY42932 | Canola | nucleus, plastid | 51.37 | 47.72 |
| CDY34056 | Canola | nucleus | 50.27 | 47.67 |
| CDX78877 | Canola | nucleus | 50.82 | 47.45 |
| CDX87432 | Canola | nucleus | 49.18 | 47.37 |
| CDY14588 | Canola | nucleus | 48.63 | 46.84 |
| CDY26881 | Canola | nucleus | 48.63 | 46.6 |
| GSMUA_Achr6P08720_001 | Banana | nucleus | 47.54 | 44.16 |
| GSMUA_Achr7P18300_001 | Banana | nucleus | 49.18 | 43.69 |
| TraesCS1B01G235800.1 | Wheat | nucleus | 63.39 | 40.99 |
| TraesCS1A01G222500.1 | Wheat | nucleus | 63.39 | 40.85 |
| TraesCS1D01G224100.1 | Wheat | nucleus | 63.39 | 40.85 |
| HORVU1Hr1G060250.1 | Barley | nucleus | 63.39 | 40.56 |
| Os05t0347400-01 | Rice | nucleus | 62.84 | 40.49 |
| Zm00001d038016_P001 | Maize | extracellular | 63.93 | 38.87 |
| EES19345 | Sorghum | nucleus, plastid | 64.48 | 36.31 |
| Zm00001d010507_P001 | Maize | nucleus, plastid | 62.3 | 36.08 |
Protein Annotations
| EnsemblPlants:CDY61050 | EnsemblPlantsGene:GSBRNA2T00030485001 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF6 |
| PFAM:PF04852 | PFscan:PS51697 | ProteinID:CDY61050 | ProteinID:CDY61050.1 | SEG:seg | UniParc:UPI0001BA8520 |
| UniProt:A0A078JAR2 | MapMan:35.1 | : | : | : | : |
Description
BnaCnng37250DBnaCnng37250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JAR2]
Coordinates
chrLK033949:+:23129..24444
Molecular Weight (calculated)
19923.8 Da
IEP (calculated)
10.146
GRAVY (calculated)
-0.531
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGETAVKAA ASSSSSPSRY ESQKRRDWNT FLQYLKNHKP PLTLSRCSGA HVIEFLKYLD QFGKTKVHVA ACPFFGVPYP PAQCTCPLRQ AWGSLDSLIG
101: RLRAAFEEIG GGLPESNPLA AKAIRIYLKE VRETQAKARG IPYDKKKRKR PRTAKETQKP DDGEGAGGSG SGDSALVISA TVV
101: RLRAAFEEIG GGLPESNPLA AKAIRIYLKE VRETQAKARG IPYDKKKRKR PRTAKETQKP DDGEGAGGSG SGDSALVISA TVV
001: MEGETAAKAA ASSSSSPSRY ESQKRRDWNT FLQYLRNHKP PLNLSRCSGA HVLEFLKYLD QFGKTKVHAT ACPFFGQPNP PSQCTCPLKQ AWGSLDALIG
101: RLRAAFEEIG GGLPESNPFA AKAVRIYLKE VRQTQAKARG IPYDKKKRKR PHTDTATPIA GDGDDAEGSG GAALVVTAAT TV
101: RLRAAFEEIG GGLPESNPFA AKAVRIYLKE VRQTQAKARG IPYDKKKRKR PHTDTATPIA GDGDDAEGSG GAALVVTAAT TV
Arabidopsis Description
LSH5LSH5 [Source:UniProtKB/TrEMBL;Acc:A0A178U8N9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.