Skip to main content
crop-pal logo
Wine grape
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY32697 Canola nucleus 54.98 71.75
Solyc06g082210.1.1 Tomato nucleus 68.4 71.17
CDY59510 Canola nucleus 55.41 70.72
PGSC0003DMT400078091 Potato nucleus 67.97 70.4
Bra020365.1-P Field mustard nucleus 54.98 70.17
KRG98226 Soybean nucleus 70.13 69.83
AT5G58500.1 Thale cress nucleus 54.55 69.23
CDY32977 Canola nucleus, plastid 53.68 67.76
CDY61050 Canola nucleus 53.25 67.21
Bra002642.1-P Field mustard nucleus, plastid 52.81 66.67
VIT_07s0005g03530.t01 Wine grape nucleus 51.95 65.57
OQU83235 Sorghum cytosol 48.48 63.64
VIT_12s0028g02160.t01 Wine grape nucleus 45.45 62.87
VIT_10s0003g01280.t01 Wine grape nucleus 47.19 62.29
VIT_14s0036g00540.t01 Wine grape plastid 49.35 59.69
Bra002644.1-P Field mustard cytosol, nucleus, plastid 47.62 58.82
VIT_05s0049g01170.t01 Wine grape nucleus 51.08 58.71
CDY32978 Canola cytosol, nucleus, plastid 46.32 57.22
GSMUA_Achr6P08720_001 Banana nucleus 47.19 55.33
GSMUA_Achr7P18300_001 Banana nucleus 46.75 52.43
TraesCS1A01G222500.1 Wheat nucleus 62.77 51.06
TraesCS1B01G235800.1 Wheat nucleus 62.34 50.88
VIT_10s0003g05690.t01 Wine grape plastid 54.55 50.81
TraesCS1D01G224100.1 Wheat nucleus 62.34 50.7
HORVU1Hr1G060250.1 Barley nucleus 62.77 50.7
VIT_19s0014g01350.t01 Wine grape nucleus 46.32 48.64
Os05t0347400-01 Rice nucleus 59.74 48.59
Zm00001d038016_P001 Maize extracellular 60.17 46.18
Zm00001d010507_P001 Maize nucleus, plastid 59.74 43.67
EES19345 Sorghum nucleus, plastid 60.61 43.08
Protein Annotations
EntrezGene:100265705wikigene:100265705MapMan:35.1InterPro:ALOG_domEMBL:AM431324ProteinID:CAN60458
ProteinID:CAN60458.1ProteinID:CCB43452ProteinID:CCB43452.1UniProt:F6GUL9EMBL:FN594951GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009299GO:GO:0009416GO:GO:0009628GO:GO:0009987InterPro:IPR006936
EntrezGene:LOC100265705wikigene:LOC100265705PFAM:PF04852PFscan:PS51697PANTHER:PTHR31165PANTHER:PTHR31165:SF6
UniParc:UPI00015C76DFArrayExpress:VIT_06s0004g07090EnsemblPlantsGene:VIT_06s0004g07090EnsemblPlants:VIT_06s0004g07090.t01RefSeq:XP_002278283RefSeq:XP_002278283.1
SEG:seg:::::
Description
No Description!
Coordinates
chr6:+:7865994..7867100
Molecular Weight (calculated)
23348.3 Da
IEP (calculated)
9.768
GRAVY (calculated)
-0.459
Length
231 amino acids
Sequence
(BLAST)
001: MDSASGGGAA DPSGGEGPSA GGGGGAAEGS SPAPPSRYES QKRRDWNTFL QYLKNHKPPL TLARCSGAHV IEFLKYLDQF GKTKVHISGC PYFGHPNPPA
101: PCACPLKQAW GSLDALIGRL RAAYEENGGR PESNPFGARA VRIYLREVRE GQAKARGIPY EKKKRKRPTV TATAVVAATN VSAPAVTQGV EVGGSSSSAA
201: AGGSGDGTGG GGGADTGGAA ATTVAPPTTT V
Best Arabidopsis Sequence Match ( AT1G07090.1 )
(BLAST)
001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
Arabidopsis Description
LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.