Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY32697 | Canola | nucleus | 54.98 | 71.75 |
Solyc06g082210.1.1 | Tomato | nucleus | 68.4 | 71.17 |
CDY59510 | Canola | nucleus | 55.41 | 70.72 |
PGSC0003DMT400078091 | Potato | nucleus | 67.97 | 70.4 |
Bra020365.1-P | Field mustard | nucleus | 54.98 | 70.17 |
KRG98226 | Soybean | nucleus | 70.13 | 69.83 |
AT5G58500.1 | Thale cress | nucleus | 54.55 | 69.23 |
CDY32977 | Canola | nucleus, plastid | 53.68 | 67.76 |
CDY61050 | Canola | nucleus | 53.25 | 67.21 |
Bra002642.1-P | Field mustard | nucleus, plastid | 52.81 | 66.67 |
VIT_07s0005g03530.t01 | Wine grape | nucleus | 51.95 | 65.57 |
OQU83235 | Sorghum | cytosol | 48.48 | 63.64 |
VIT_12s0028g02160.t01 | Wine grape | nucleus | 45.45 | 62.87 |
VIT_10s0003g01280.t01 | Wine grape | nucleus | 47.19 | 62.29 |
VIT_14s0036g00540.t01 | Wine grape | plastid | 49.35 | 59.69 |
Bra002644.1-P | Field mustard | cytosol, nucleus, plastid | 47.62 | 58.82 |
VIT_05s0049g01170.t01 | Wine grape | nucleus | 51.08 | 58.71 |
CDY32978 | Canola | cytosol, nucleus, plastid | 46.32 | 57.22 |
GSMUA_Achr6P08720_001 | Banana | nucleus | 47.19 | 55.33 |
GSMUA_Achr7P18300_001 | Banana | nucleus | 46.75 | 52.43 |
TraesCS1A01G222500.1 | Wheat | nucleus | 62.77 | 51.06 |
TraesCS1B01G235800.1 | Wheat | nucleus | 62.34 | 50.88 |
VIT_10s0003g05690.t01 | Wine grape | plastid | 54.55 | 50.81 |
TraesCS1D01G224100.1 | Wheat | nucleus | 62.34 | 50.7 |
HORVU1Hr1G060250.1 | Barley | nucleus | 62.77 | 50.7 |
VIT_19s0014g01350.t01 | Wine grape | nucleus | 46.32 | 48.64 |
Os05t0347400-01 | Rice | nucleus | 59.74 | 48.59 |
Zm00001d038016_P001 | Maize | extracellular | 60.17 | 46.18 |
Zm00001d010507_P001 | Maize | nucleus, plastid | 59.74 | 43.67 |
EES19345 | Sorghum | nucleus, plastid | 60.61 | 43.08 |
Protein Annotations
EntrezGene:100265705 | wikigene:100265705 | MapMan:35.1 | InterPro:ALOG_dom | EMBL:AM431324 | ProteinID:CAN60458 |
ProteinID:CAN60458.1 | ProteinID:CCB43452 | ProteinID:CCB43452.1 | UniProt:F6GUL9 | EMBL:FN594951 | GO:GO:0005575 |
GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
GO:GO:0009058 | GO:GO:0009299 | GO:GO:0009416 | GO:GO:0009628 | GO:GO:0009987 | InterPro:IPR006936 |
EntrezGene:LOC100265705 | wikigene:LOC100265705 | PFAM:PF04852 | PFscan:PS51697 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF6 |
UniParc:UPI00015C76DF | ArrayExpress:VIT_06s0004g07090 | EnsemblPlantsGene:VIT_06s0004g07090 | EnsemblPlants:VIT_06s0004g07090.t01 | RefSeq:XP_002278283 | RefSeq:XP_002278283.1 |
SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr6:+:7865994..7867100
Molecular Weight (calculated)
23348.3 Da
IEP (calculated)
9.768
GRAVY (calculated)
-0.459
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSASGGGAA DPSGGEGPSA GGGGGAAEGS SPAPPSRYES QKRRDWNTFL QYLKNHKPPL TLARCSGAHV IEFLKYLDQF GKTKVHISGC PYFGHPNPPA
101: PCACPLKQAW GSLDALIGRL RAAYEENGGR PESNPFGARA VRIYLREVRE GQAKARGIPY EKKKRKRPTV TATAVVAATN VSAPAVTQGV EVGGSSSSAA
201: AGGSGDGTGG GGGADTGGAA ATTVAPPTTT V
101: PCACPLKQAW GSLDALIGRL RAAYEENGGR PESNPFGARA VRIYLREVRE GQAKARGIPY EKKKRKRPTV TATAVVAATN VSAPAVTQGV EVGGSSSSAA
201: AGGSGDGTGG GGGADTGGAA ATTVAPPTTT V
001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
Arabidopsis Description
LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.