Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
20408568
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d010507_P001 | Maize | nucleus, plastid | 84.72 | 80.7 |
| EES19345 | Sorghum | nucleus, plastid | 84.72 | 78.46 |
| TraesCS1D01G224100.1 | Wheat | nucleus | 68.44 | 72.54 |
| TraesCS1A01G222500.1 | Wheat | nucleus | 68.44 | 72.54 |
| TraesCS1B01G235800.1 | Wheat | nucleus | 68.11 | 72.44 |
| OQU83235 | Sorghum | cytosol | 42.19 | 72.16 |
| HORVU1Hr1G060250.1 | Barley | nucleus | 67.11 | 70.63 |
| Zm00001d025863_P001 | Maize | nucleus | 38.87 | 69.64 |
| Os05t0347400-01 | Rice | nucleus | 64.12 | 67.96 |
| Bra018337.1-P | Field mustard | cytosol | 36.88 | 67.27 |
| CDY10712 | Canola | cytosol, nucleus, plastid | 36.54 | 66.67 |
| CDY32697 | Canola | nucleus | 39.2 | 66.67 |
| Zm00001d043011_P001 | Maize | nucleus | 46.18 | 66.51 |
| CDY32977 | Canola | nucleus, plastid | 40.2 | 66.12 |
| Bra020365.1-P | Field mustard | nucleus | 39.53 | 65.75 |
| CDY59510 | Canola | nucleus | 39.53 | 65.75 |
| Bra002642.1-P | Field mustard | nucleus, plastid | 39.87 | 65.57 |
| AT5G58500.1 | Thale cress | nucleus | 39.53 | 65.38 |
| AT1G07090.1 | Thale cress | nucleus | 41.86 | 64.29 |
| Zm00001d012473_P001 | Maize | nucleus | 44.19 | 63.94 |
| CDY61050 | Canola | nucleus | 38.87 | 63.93 |
| CDY02038 | Canola | cytosol | 34.22 | 62.8 |
| CDY10247 | Canola | nucleus, plastid | 41.2 | 62.63 |
| CDY06675 | Canola | nucleus, plastid | 41.2 | 62.63 |
| CDY59064 | Canola | nucleus | 40.86 | 62.12 |
| Bra015551.1-P | Field mustard | nucleus, plastid | 40.86 | 62.12 |
| Zm00001d017263_P001 | Maize | nucleus | 41.86 | 61.76 |
| Bra031552.1-P | Field mustard | nucleus | 40.53 | 61.62 |
| Zm00001d003057_P001 | Maize | nucleus | 40.86 | 61.5 |
| Zm00001d051143_P001 | Maize | nucleus | 41.2 | 61.39 |
| CDY09940 | Canola | nucleus | 40.2 | 61.11 |
| CDX94980 | Canola | nucleus | 40.2 | 61.11 |
| CDY20312 | Canola | nucleus | 40.2 | 61.11 |
| CDY52287 | Canola | nucleus | 40.2 | 61.11 |
| KRH17088 | Soybean | nucleus | 43.85 | 60.55 |
| VIT_06s0004g07090.t01 | Wine grape | nucleus | 46.18 | 60.17 |
| Zm00001d038442_P001 | Maize | nucleus | 48.84 | 59.51 |
| KRH72732 | Soybean | nucleus | 43.19 | 59.36 |
| PGSC0003DMT400078091 | Potato | nucleus | 43.85 | 59.19 |
| KRG98226 | Soybean | nucleus | 45.51 | 59.05 |
| Solyc06g082210.1.1 | Tomato | nucleus | 43.19 | 58.56 |
| Zm00001d010596_P001 | Maize | nucleus | 47.51 | 57.89 |
| GSMUA_Achr5P07420_001 | Banana | nucleus | 40.2 | 57.08 |
| KRH30185 | Soybean | nucleus | 44.52 | 57.02 |
| Bra002644.1-P | Field mustard | cytosol, nucleus, plastid | 35.22 | 56.68 |
| Zm00001d014032_P001 | Maize | nucleus | 38.87 | 55.71 |
| Zm00001d032696_P001 | Maize | nucleus | 38.87 | 54.93 |
| CDY32978 | Canola | cytosol, nucleus, plastid | 33.89 | 54.55 |
| Zm00001d018433_P001 | Maize | nucleus | 41.2 | 50.2 |
| Zm00001d051966_P001 | Maize | nucleus | 40.2 | 49.19 |
| Zm00001d015342_P001 | Maize | nucleus | 38.87 | 47.37 |
| Zm00001d036617_P001 | Maize | nucleus | 40.2 | 43.68 |
| Zm00001d046998_P001 | Maize | nucleus | 40.2 | 43.68 |
| GSMUA_Achr9P18050_001 | Banana | nucleus | 36.54 | 38.73 |
| Zm00001d018775_P001 | Maize | nucleus | 32.89 | 38.67 |
| Zm00001d036993_P001 | Maize | mitochondrion | 17.28 | 30.06 |
| Zm00001d020559_P001 | Maize | mitochondrion | 7.31 | 10.73 |
Protein Annotations
| EnsemblPlants:Zm00001d038016_P001 | EnsemblPlants:Zm00001d038016_T001 | EnsemblPlantsGene:Zm00001d038016 | EntrezGene:103630273 | InterPro:ALOG_dom | InterPro:IPR006936 |
| PANTHER:PTHR31165 | PANTHER:PTHR31165:SF6 | PFAM:PF04852 | PFscan:PS51697 | ProteinID:AQK85475.1 | SEG:seg |
| UniParc:UPI000221A119 | UniProt:A0A1D6M2R6 | MapMan:35.1 | : | : | : |
Description
Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5
Coordinates
chr6:-:145258369..145259274
Molecular Weight (calculated)
31306.9 Da
IEP (calculated)
8.305
GRAVY (calculated)
-0.825
Length
301 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPGPDAPAG GGGGGGTSEP AEAGPSPSSS SAAAAASSSS RQQAEQEAQQ QQGAQQREQP AVRAQAQPQP QPLTQQPPAG LSRYESQKRR DWNTFLQYLR
101: NHKPPLTLAR CSGAHVIEFL RYLDQFGKTK VHAEGCAYFG QPNPPAPCTC PLRQAWGSLD ALIGRLRAAY EESGGRPESN PFAAKAVRIY LRDVREAQAK
201: ARGIPYEKKK RKRGSAAAPP VAPPPVVTAE AAGTSSGAGG GDDEDDDEPS PSADEPQRQQ TATPAPPASI ISSASASSSS VAPATTTTTS KKEKEGSAPS
301: S
101: NHKPPLTLAR CSGAHVIEFL RYLDQFGKTK VHAEGCAYFG QPNPPAPCTC PLRQAWGSLD ALIGRLRAAY EESGGRPESN PFAAKAVRIY LRDVREAQAK
201: ARGIPYEKKK RKRGSAAAPP VAPPPVVTAE AAGTSSGAGG GDDEDDDEPS PSADEPQRQQ TATPAPPASI ISSASASSSS VAPATTTTTS KKEKEGSAPS
301: S
001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
Arabidopsis Description
LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.