Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- extracellular 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH17088 | Soybean | nucleus | 91.32 | 91.74 |
| CDY32697 | Canola | nucleus | 56.62 | 70.06 |
| CDY59510 | Canola | nucleus | 57.08 | 69.06 |
| CDY32977 | Canola | nucleus, plastid | 57.53 | 68.85 |
| AT5G58500.1 | Thale cress | nucleus | 57.08 | 68.68 |
| Bra020365.1-P | Field mustard | nucleus | 56.62 | 68.51 |
| CDY61050 | Canola | nucleus | 57.08 | 68.31 |
| Bra002642.1-P | Field mustard | nucleus, plastid | 56.62 | 67.76 |
| KRH30185 | Soybean | nucleus | 69.86 | 65.11 |
| KRG98226 | Soybean | nucleus | 68.49 | 64.66 |
| Solyc06g082210.1.1 | Tomato | nucleus | 63.01 | 62.16 |
| KRH34151 | Soybean | plastid | 49.77 | 61.93 |
| Bra002644.1-P | Field mustard | cytosol, nucleus, plastid | 52.51 | 61.5 |
| KRG92413 | Soybean | nucleus | 53.88 | 61.46 |
| KRG97044 | Soybean | plastid | 51.14 | 61.2 |
| PGSC0003DMT400078091 | Potato | nucleus | 62.1 | 60.99 |
| OQU83235 | Sorghum | cytosol | 48.4 | 60.23 |
| CDY32978 | Canola | cytosol, nucleus, plastid | 51.14 | 59.89 |
| KRH42865 | Soybean | plastid | 45.21 | 59.28 |
| KRH68792 | Soybean | plastid | 49.77 | 59.24 |
| KRH21273 | Soybean | nucleus | 47.49 | 57.46 |
| KRG92633 | Soybean | nucleus | 49.77 | 57.37 |
| KRH34391 | Soybean | nucleus | 52.51 | 56.93 |
| KRH11015 | Soybean | nucleus | 47.03 | 56.91 |
| KRH27046 | Soybean | nucleus | 44.75 | 56.0 |
| KRH67397 | Soybean | nucleus | 51.14 | 55.17 |
| KRG95674 | Soybean | nucleus | 51.14 | 55.17 |
| KRH32192 | Soybean | nucleus | 51.6 | 54.59 |
| KRH27347 | Soybean | nucleus | 45.66 | 54.35 |
| KRH22284 | Soybean | nucleus | 39.27 | 53.75 |
| KRH25774 | Soybean | nucleus | 43.38 | 53.67 |
| KRH56293 | Soybean | nucleus | 51.14 | 53.08 |
| KRH55744 | Soybean | nucleus | 43.38 | 53.07 |
| KRH21973 | Soybean | nucleus | 45.66 | 51.55 |
| KRH58368 | Soybean | nucleus | 53.88 | 50.0 |
| GSMUA_Achr6P08720_001 | Banana | nucleus | 44.29 | 49.24 |
| KRH42251 | Soybean | plastid | 54.79 | 48.58 |
| Os05t0347400-01 | Rice | nucleus | 61.19 | 47.18 |
| GSMUA_Achr7P18300_001 | Banana | nucleus | 44.29 | 47.09 |
| TraesCS1B01G235800.1 | Wheat | nucleus | 60.73 | 47.0 |
| HORVU1Hr1G060250.1 | Barley | nucleus | 61.19 | 46.85 |
| TraesCS1A01G222500.1 | Wheat | nucleus | 60.73 | 46.83 |
| TraesCS1D01G224100.1 | Wheat | nucleus | 60.73 | 46.83 |
| Zm00001d038016_P001 | Maize | extracellular | 59.36 | 43.19 |
| Zm00001d010507_P001 | Maize | nucleus, plastid | 60.27 | 41.77 |
| EES19345 | Sorghum | nucleus, plastid | 61.64 | 41.54 |
Protein Annotations
| EntrezGene:100802715 | MapMan:35.1 | EMBL:ACUP02001237 | InterPro:ALOG_dom | EnsemblPlantsGene:GLYMA_02G230200 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009299 | GO:GO:0009416 | GO:GO:0009628 | GO:GO:0009987 | InterPro:IPR006936 |
| UniProt:K7KA89 | EnsemblPlants:KRH72732 | ProteinID:KRH72732 | ProteinID:KRH72732.1 | ProteinID:KRH72733.1 | ProteinID:KRH72734.1 |
| ProteinID:KRH72735.1 | ProteinID:KRH72736.1 | ProteinID:KRH72737.1 | PFAM:PF04852 | PFscan:PS51697 | PANTHER:PTHR31165 |
| PANTHER:PTHR31165:SF6 | UniParc:UPI000233794E | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr2:+:41771303..41775425
Molecular Weight (calculated)
22983.2 Da
IEP (calculated)
10.349
GRAVY (calculated)
-0.352
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAASEAAAA VAAPQAEGSP AAAAAPSRYE SQKRRDWNTF LQYLRNHKPP LTLARCSGAH VIEFLKYLDQ FGKTKVHIAG CPYFGHPNPP APCACPLKQA
101: WGSLDALIGR LRAAFEENGG RPESNPFATR AVRIYLKEVR EGQAKARGIP YEKKKRKRTA VTTSVTSAAT VMSTLTGSSP NNTITNGAGS TTGNTTNGAG
201: VSVPSVAATA TPNVTATAV
101: WGSLDALIGR LRAAFEENGG RPESNPFATR AVRIYLKEVR EGQAKARGIP YEKKKRKRTA VTTSVTSAAT VMSTLTGSSP NNTITNGAGS TTGNTTNGAG
201: VSVPSVAATA TPNVTATAV
001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
Arabidopsis Description
LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.