Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P08720_001 | Banana | nucleus | 71.84 | 75.13 |
| GSMUA_Achr3P10070_001 | Banana | nucleus | 59.22 | 56.22 |
| GSMUA_Achr11P... | Banana | nucleus | 46.12 | 53.98 |
| GSMUA_Achr8P01890_001 | Banana | nucleus | 52.91 | 53.69 |
| GSMUA_Achr10P... | Banana | nucleus | 52.43 | 52.94 |
| GSMUA_AchrUn_... | Banana | nucleus | 47.57 | 52.69 |
| CDY32697 | Canola | nucleus | 44.66 | 51.98 |
| GSMUA_Achr5P18640_001 | Banana | nucleus | 43.2 | 51.74 |
| GSMUA_Achr5P07420_001 | Banana | nucleus | 52.91 | 51.42 |
| AT5G58500.1 | Thale cress | nucleus | 45.15 | 51.1 |
| GSMUA_Achr11P... | Banana | nucleus | 23.3 | 51.06 |
| CDY59510 | Canola | nucleus | 44.66 | 50.83 |
| Bra020365.1-P | Field mustard | nucleus | 44.66 | 50.83 |
| GSMUA_Achr11P... | Banana | nucleus | 49.03 | 50.75 |
| CDY32977 | Canola | nucleus, plastid | 44.17 | 49.73 |
| GSMUA_Achr4P21940_001 | Banana | nucleus | 42.23 | 49.71 |
| GSMUA_Achr5P03870_001 | Banana | nucleus | 41.75 | 49.71 |
| CDY61050 | Canola | nucleus | 43.69 | 49.18 |
| Bra002642.1-P | Field mustard | nucleus, plastid | 43.69 | 49.18 |
| GSMUA_Achr5P14570_001 | Banana | nucleus | 41.26 | 49.13 |
| PGSC0003DMT400078091 | Potato | nucleus | 51.94 | 47.98 |
| GSMUA_Achr1P09270_001 | Banana | nucleus | 39.81 | 47.67 |
| Solyc06g082210.1.1 | Tomato | nucleus | 50.97 | 47.3 |
| GSMUA_Achr1P05650_001 | Banana | nucleus | 37.38 | 46.95 |
| GSMUA_Achr7P22390_001 | Banana | endoplasmic reticulum, nucleus | 47.09 | 46.86 |
| VIT_06s0004g07090.t01 | Wine grape | nucleus | 52.43 | 46.75 |
| GSMUA_AchrUn_... | Banana | nucleus | 34.95 | 46.75 |
| GSMUA_Achr4P31900_001 | Banana | nucleus | 42.23 | 46.28 |
| GSMUA_Achr9P30540_001 | Banana | nucleus | 41.26 | 45.95 |
| KRH17088 | Soybean | nucleus | 47.57 | 44.95 |
| GSMUA_Achr11P... | Banana | nucleus | 44.17 | 44.83 |
| KRG98226 | Soybean | nucleus | 50.49 | 44.83 |
| GSMUA_Achr4P28760_001 | Banana | nucleus | 39.81 | 44.81 |
| KRH72732 | Soybean | nucleus | 47.09 | 44.29 |
| GSMUA_Achr5P00260_001 | Banana | nucleus | 43.69 | 44.12 |
| Bra002644.1-P | Field mustard | cytosol, nucleus, plastid | 39.81 | 43.85 |
| KRH30185 | Soybean | nucleus | 49.51 | 43.4 |
| CDY32978 | Canola | cytosol, nucleus, plastid | 38.84 | 42.78 |
| GSMUA_AchrUn_... | Banana | nucleus | 42.72 | 42.31 |
| GSMUA_Achr6P36540_001 | Banana | nucleus | 32.04 | 40.99 |
| GSMUA_Achr11P... | Banana | nucleus | 43.69 | 40.54 |
| GSMUA_Achr9P18050_001 | Banana | nucleus | 55.34 | 40.14 |
| GSMUA_Achr5P29450_001 | Banana | cytosol, nucleus, plastid | 49.51 | 38.06 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P18300_001 | EnsemblPlants:GSMUA_Achr7T18300_001 | EnsemblPlantsGene:GSMUA_Achr7G18300_001 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 |
| PANTHER:PTHR31165:SF6 | PFAM:PF04852 | PFscan:PS51697 | SEG:seg | UniParc:UPI0002969281 | UniProt:M0TIL7 |
| MapMan:35.1 | : | : | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr7G18300_001]
Coordinates
chr7:+:21120030..21120722
Molecular Weight (calculated)
21885.5 Da
IEP (calculated)
10.246
GRAVY (calculated)
-0.747
Length
206 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPAAQVSGG DVGDDGATPP PPSQPREQQE QLEQQQQQQK PSRYESQKRR DWNTFIQYLT NHKPPLTVGR CGGAHVVEFL KYLDQFGKTK AWGSLDALIG
101: RLRAAYEENG GGRPESNPFG AKVVKSHLRE VRESQAKARG VAYKKKKRKR RLPSAVGEGC SRGVAGTAAT APTTTIAMAT AEVASVSASS ASATASDAAG
201: SSTSAS
101: RLRAAYEENG GGRPESNPFG AKVVKSHLRE VRESQAKARG VAYKKKKRKR RLPSAVGEGC SRGVAGTAAT APTTTIAMAT AEVASVSASS ASATASDAAG
201: SSTSAS
001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
Arabidopsis Description
LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.