Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g082210.1.1 | Tomato | nucleus | 94.17 | 94.59 |
| VIT_06s0004g07090.t01 | Wine grape | nucleus | 70.4 | 67.97 |
| CDY32697 | Canola | nucleus | 53.81 | 67.8 |
| CDY59510 | Canola | nucleus | 54.71 | 67.4 |
| AT5G58500.1 | Thale cress | nucleus | 54.71 | 67.03 |
| Bra020365.1-P | Field mustard | nucleus | 54.26 | 66.85 |
| CDY32977 | Canola | nucleus, plastid | 54.26 | 66.12 |
| Bra002642.1-P | Field mustard | nucleus, plastid | 53.81 | 65.57 |
| CDY61050 | Canola | nucleus | 53.81 | 65.57 |
| KRG98226 | Soybean | nucleus | 65.47 | 62.93 |
| KRH72732 | Soybean | nucleus | 60.99 | 62.1 |
| KRH17088 | Soybean | nucleus | 60.54 | 61.93 |
| KRH30185 | Soybean | nucleus | 65.02 | 61.7 |
| OQU83235 | Sorghum | cytosol | 47.98 | 60.8 |
| PGSC0003DMT400054474 | Potato | plastid | 47.09 | 60.0 |
| PGSC0003DMT400026698 | Potato | nucleus | 49.33 | 59.46 |
| PGSC0003DMT400044213 | Potato | mitochondrion | 53.36 | 58.62 |
| PGSC0003DMT400052658 | Potato | nucleus | 45.29 | 58.38 |
| Bra002644.1-P | Field mustard | cytosol, nucleus, plastid | 48.43 | 57.75 |
| CDY32978 | Canola | cytosol, nucleus, plastid | 47.09 | 56.15 |
| PGSC0003DMT400029945 | Potato | nucleus | 45.29 | 55.19 |
| PGSC0003DMT400026433 | Potato | nucleus | 47.09 | 54.97 |
| PGSC0003DMT400027334 | Potato | nucleus | 43.5 | 54.49 |
| PGSC0003DMT400051692 | Potato | nucleus | 49.78 | 53.37 |
| PGSC0003DMT400018295 | Potato | nucleus | 44.84 | 52.36 |
| GSMUA_Achr6P08720_001 | Banana | nucleus | 46.19 | 52.28 |
| PGSC0003DMT400060169 | Potato | nucleus, plastid | 48.88 | 52.15 |
| GSMUA_Achr7P18300_001 | Banana | nucleus | 47.98 | 51.94 |
| PGSC0003DMT400054899 | Potato | nucleus | 46.19 | 49.76 |
| PGSC0003DMT400039811 | Potato | nucleus | 44.84 | 48.78 |
| TraesCS1B01G235800.1 | Wheat | nucleus | 60.09 | 47.35 |
| HORVU1Hr1G060250.1 | Barley | nucleus | 60.54 | 47.2 |
| TraesCS1A01G222500.1 | Wheat | nucleus | 60.09 | 47.18 |
| TraesCS1D01G224100.1 | Wheat | nucleus | 60.09 | 47.18 |
| Os05t0347400-01 | Rice | nucleus | 58.74 | 46.13 |
| Zm00001d038016_P001 | Maize | extracellular | 59.19 | 43.85 |
| EES19345 | Sorghum | nucleus, plastid | 60.99 | 41.85 |
| Zm00001d010507_P001 | Maize | nucleus, plastid | 59.19 | 41.77 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400078091 | EnsemblPlantsGene:PGSC0003DMG400030373 | EntrezGene:102596443 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 |
| PANTHER:PTHR31165:SF6 | PFAM:PF04852 | PFscan:PS51697 | PGSC:PGSC0003DMG400030373 | RefSeq:XP_006350860.1 | SEG:seg |
| UniParc:UPI000296BBCB | UniProt:M1CZD2 | MapMan:35.1 | : | : | : |
Description
Protein of unknown function (DUF640) [Source:Projected from Arabidopsis thaliana (AT1G07090) TAIR;Acc:AT1G07090]
Coordinates
chr6:+:57422840..57424617
Molecular Weight (calculated)
23319.2 Da
IEP (calculated)
9.585
GRAVY (calculated)
-0.652
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSTSRVEQS DPNIVGSEGG AGEGTSSVSG ATEGGQSTTV SAAPPSRYES QKRRDWNTFL QYLRNHKPPL TLARCSGAHV IEFLKYLDQF GKTKVHVTGC
101: PYFGHPNPPA PCACPLKQAW GSLDALIGRL RAAYEENGGK PESNPFGAKA VRIYLREVRE SQAKARGIPY EKKKRKRPST SSSVATAGSA ITAEGGGSGG
201: GGDGSGGDGV IGQQPPTAPN TTV
101: PYFGHPNPPA PCACPLKQAW GSLDALIGRL RAAYEENGGK PESNPFGAKA VRIYLREVRE SQAKARGIPY EKKKRKRPST SSSVATAGSA ITAEGGGSGG
201: GGDGSGGDGV IGQQPPTAPN TTV
001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
Arabidopsis Description
LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.