Factsheet for PGSC0003DMT400051692

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g083860.2.1	Tomato	nucleus	90.87	86.7
GSMUA_Achr11P...	Banana	nucleus	37.02	81.91
PGSC0003DMT400026698	Potato	nucleus	67.79	76.22
VIT_07s0005g03530.t01	Wine grape	nucleus	64.42	73.22
Zm00001d025863_P001	Maize	nucleus	57.69	71.43
KRH32192	Soybean	nucleus	70.19	70.53
KRH67397	Soybean	nucleus	67.79	69.46
KRG95674	Soybean	nucleus	67.79	69.46
KRH56293	Soybean	nucleus	68.75	67.77
PGSC0003DMT400044213	Potato	mitochondrion	64.42	66.01
GSMUA_Achr5P03870_001	Banana	nucleus	53.37	64.16
CDY15426	Canola	nucleus	66.35	63.59
PGSC0003DMT400054474	Potato	plastid	53.37	63.43
GSMUA_Achr5P18640_001	Banana	nucleus	52.4	63.37
Bra018263.1-P	Field mustard	nucleus	65.38	63.26
CDY10790	Canola	nucleus	65.38	63.26
Bra021707.1-P	Field mustard	nucleus	65.87	63.13
CDY57087	Canola	nucleus	65.87	63.13
CDY57088	Canola	nucleus	65.87	63.13
Os04t0516200-01	Rice	nucleus	61.06	62.87
GSMUA_Achr1P09270_001	Banana	nucleus	51.92	62.79
CDY24755	Canola	nucleus, plastid	64.9	62.79
GSMUA_Achr5P14570_001	Banana	nucleus	51.92	62.43
GSMUA_Achr4P21940_001	Banana	nucleus	52.4	62.29
EES11114	Sorghum	nucleus	59.13	61.81
TraesCS1B01G172100.1	Wheat	nucleus	61.06	61.65
TraesCS1D01G153700.1	Wheat	nucleus	61.06	61.65
TraesCS6B01G256500.1	Wheat	nucleus	59.13	61.5
Zm00001d003057_P001	Maize	nucleus	59.13	61.5
Zm00001d014032_P001	Maize	nucleus	62.02	61.43
TraesCS2D01G378900.1	Wheat	nucleus	59.13	61.19
AT2G31160.1	Thale cress	nucleus	64.42	61.19
TraesCS6A01G225000.1	Wheat	nucleus	59.13	60.89
TraesCS6D01G209700.1	Wheat	nucleus	59.13	60.89
HORVU2Hr1G089190.1	Barley	nucleus	58.17	60.8
Os10t0478000-01	Rice	nucleus	59.62	60.78
Zm00001d017263_P001	Maize	nucleus	59.62	60.78
TraesCS2B01G399800.1	Wheat	nucleus	58.65	60.7
Zm00001d032696_P001	Maize	nucleus	62.02	60.56
Zm00001d051143_P001	Maize	nucleus	58.65	60.4
HORVU6Hr1G058340.2	Barley	nucleus	59.13	60.29
TraesCS2A01G382500.1	Wheat	nucleus	58.17	60.2
KXG30661	Sorghum	nucleus	60.1	60.1
Os02t0623400-00	Rice	nucleus	60.1	59.81
PGSC0003DMT400052658	Potato	nucleus	49.04	58.96
KXG38327	Sorghum	nucleus	62.5	58.3
GSMUA_AchrUn_...	Banana	nucleus	42.79	57.79
HORVU1Hr1G041240.5	Barley	nucleus	61.54	56.39
GSMUA_Achr1P05650_001	Banana	nucleus	44.23	56.1
GSMUA_Achr4P28760_001	Banana	nucleus	49.04	55.74
PGSC0003DMT400029945	Potato	nucleus	48.56	55.19
PGSC0003DMT400027334	Potato	nucleus	47.12	55.06
PGSC0003DMT400026433	Potato	nucleus	50.0	54.45
GSMUA_Achr6P36540_001	Banana	nucleus	41.35	53.42
PGSC0003DMT400060169	Potato	nucleus, plastid	53.37	53.11
TraesCS1A01G154900.1	Wheat	nucleus	61.06	52.7
Zm00001d051966_P001	Maize	nucleus	61.54	52.03
PGSC0003DMT400018295	Potato	nucleus	47.6	51.83
Zm00001d018433_P001	Maize	nucleus	61.54	51.82
PGSC0003DMT400039811	Potato	nucleus	50.96	51.71
EES05986	Sorghum	nucleus	62.02	51.39
Os02t0811000-01	Rice	nucleus	60.58	50.81
TraesCS6B01G414700.1	Wheat	nucleus	61.54	50.79
TraesCS6D01G361900.1	Wheat	nucleus	61.54	50.79
TraesCS6A01G377300.1	Wheat	nucleus	61.54	50.79
PGSC0003DMT400078091	Potato	nucleus	53.37	49.78
PGSC0003DMT400054899	Potato	nucleus	49.04	49.28
HORVU6Hr1G088790.1	Barley	nucleus	60.58	49.22

Protein Annotations

EntrezGene:102585062	MapMan:35.1	InterPro:ALOG_dom	GO:GO:0000003	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0007275	GO:GO:0008150	GO:GO:0009653	GO:GO:0009791
GO:GO:0009908	GO:GO:0010199	GO:GO:0010492	GO:GO:0048441	GO:GO:0048834	GO:GO:0090698
InterPro:IPR006936	UniProt:M1BS26	PFAM:PF04852	EnsemblPlantsGene:PGSC0003DMG400020074	PGSC:PGSC0003DMG400020074	EnsemblPlants:PGSC0003DMT400051692
PFscan:PS51697	PANTHER:PTHR31165	PANTHER:PTHR31165:SF36	UniParc:UPI0002958080	SEG:seg	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400020074]

Coordinates

chr6:-:58715915..58717226

Molecular Weight (calculated)

23291.6 Da

IEP (calculated)

10.167

GRAVY (calculated)

-0.823

Length

208 amino acids

Sequence
(BLAST)

001: MASFTELVEN SNHHPQEKIN IETVNNIEIT SSSSSAAAPA APASSSSRYE NQKRRDWNTF GQYLRNHRPP LTLSRCSGAH VLEFLRYLDQ FGKTKVHTPP
101: FVIQMCPFYG HPNPPAPCPC PLKQAWGSLD ALVGRLRAAY EENGGKPETN PFGARAVRLY LREVRDLQSK ARGVSYEKKK KRKRPPPPPP PQQQLPLSSP
201: PLSGEPER

Best Arabidopsis Sequence Match ( AT1G07090.1 )
(BLAST)

001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP

Arabidopsis Description

LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.