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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • plastid 4
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
iPSORT:plastid
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:plastid
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2A01G382500.1 Wheat nucleus 97.49 96.52
TraesCS2D01G378900.1 Wheat nucleus 96.98 96.02
TraesCS2B01G399800.1 Wheat nucleus 95.98 95.02
Os04t0516200-01 Rice nucleus 86.43 85.15
GSMUA_Achr11P... Banana nucleus 39.7 84.04
HORVU6Hr1G058340.2 Barley nucleus 79.4 77.45
KXG30661 Sorghum nucleus 80.4 76.92
Bra023738.1-P Field mustard plastid 61.81 69.89
Solyc09g025280.1.1 Tomato nucleus 59.3 69.01
VIT_07s0005g03530.t01 Wine grape nucleus 63.32 68.85
KRH34151 Soybean plastid 60.3 68.18
CDY69731 Canola plastid 64.32 65.64
CDY35523 Canola plastid 64.32 65.64
KRG92413 Soybean nucleus 63.32 65.62
KRG97044 Soybean plastid 59.8 65.03
HORVU1Hr1G041240.5 Barley nucleus 73.87 64.76
KRG92633 Soybean nucleus 61.81 64.74
AT3G23290.2 Thale cress plastid 63.32 64.62
VIT_14s0036g00540.t01 Wine grape plastid 61.31 63.87
CDX85083 Canola plastid 63.82 63.82
CDX77531 Canola plastid 63.82 63.82
Bra014935.1-P Field mustard plastid 63.82 63.82
PGSC0003DMT400026698 Potato nucleus 59.3 63.78
VIT_05s0049g01170.t01 Wine grape nucleus 64.32 63.68
KRH68792 Soybean plastid 58.29 63.04
KRH34391 Soybean nucleus 63.82 62.87
KRH67397 Soybean nucleus 63.82 62.56
KRG95674 Soybean nucleus 63.82 62.56
KRH32192 Soybean nucleus 64.82 62.32
GSMUA_Achr5P18640_001 Banana nucleus 53.77 62.21
PGSC0003DMT400044213 Potato mitochondrion 62.81 61.58
GSMUA_Achr5P14570_001 Banana nucleus 53.27 61.27
GSMUA_Achr5P03870_001 Banana nucleus 53.27 61.27
GSMUA_Achr4P21940_001 Banana nucleus 53.77 61.14
Solyc09g090180.1.1 Tomato plastid 63.82 61.06
AT5G28490.1 Thale cress nucleus, plastid 58.29 61.05
CDY52479 Canola nucleus, plastid 58.29 61.05
CDX86199 Canola plastid 58.79 60.94
Bra020610.1-P Field mustard nucleus, plastid 58.29 60.73
KRH56293 Soybean nucleus 64.32 60.66
CDY57024 Canola nucleus, plastid 58.29 60.42
CDY52505 Canola nucleus, plastid 57.79 60.21
CDY05593 Canola nucleus, plastid 57.79 60.21
Bra036134.1-P Field mustard nucleus, plastid 57.79 59.9
Bra009997.1-P Field mustard plastid 57.79 59.9
CDY64755 Canola nucleus, plastid 56.78 58.85
PGSC0003DMT400051692 Potato nucleus 60.8 58.17
PGSC0003DMT400029945 Potato nucleus 53.27 57.92
CDY21126 Canola nucleus, plastid 55.28 57.89
CDY63294 Canola nucleus 53.27 57.61
GSMUA_Achr4P28760_001 Banana nucleus 52.76 57.38
CDY30000 Canola nucleus, plastid 54.77 57.37
Solyc06g083860.2.1 Tomato nucleus 62.81 57.34
Solyc04g009980.2.1 Tomato nucleus, plastid 51.76 57.22
Bra018263.1-P Field mustard nucleus 61.81 57.21
CDY10790 Canola nucleus 61.81 57.21
CDX74186 Canola nucleus, plastid 54.27 56.84
Bra001109.1-P Field mustard nucleus, plastid 54.27 56.84
CDY24755 Canola nucleus, plastid 61.31 56.74
CDY15426 Canola nucleus 61.81 56.68
CDY57088 Canola nucleus 61.81 56.68
CDY57087 Canola nucleus 61.81 56.68
Bra021707.1-P Field mustard nucleus 61.81 56.68
AT2G31160.1 Thale cress nucleus 61.81 56.16
CDY49331 Canola nucleus, plastid 54.77 55.61
CDY42932 Canola nucleus, plastid 54.77 55.33
AT3G04510.1 Thale cress nucleus, plastid 55.78 55.22
Bra040188.1-P Field mustard nucleus, plastid 54.27 54.82
PGSC0003DMT400060169 Potato nucleus, plastid 56.28 53.59
Solyc05g055020.2.1 Tomato nucleus 56.78 53.55
HORVU6Hr1G088790.1 Barley nucleus 67.84 52.73
HORVU1Hr1G070480.1 Barley nucleus 58.79 50.43
HORVU3Hr1G088000.2 Barley plastid 57.29 49.78
HORVU7Hr1G106960.2 Barley nucleus 62.31 46.1
HORVU1Hr1G060250.1 Barley nucleus 61.31 42.66
HORVU2Hr1G060890.2 Barley nucleus, plastid 52.76 40.38
Bra040137.1-P Field mustard nucleus, plastid 55.28 37.04
Protein Annotations
EMBL:AK358335EnsemblPlants:HORVU2Hr1G089190.1EnsemblPlantsGene:HORVU2Hr1G089190InterPro:ALOG_domInterPro:IPR006936PANTHER:PTHR31165
PANTHER:PTHR31165:SF12PFAM:PF04852PFscan:PS51697SEG:segUniParc:UPI000200541BUniProt:F2D378
MapMan:35.1:::::
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2D378]
Coordinates
chrchr2H:+:637625910..637627912
Molecular Weight (calculated)
21330.0 Da
IEP (calculated)
9.904
GRAVY (calculated)
-0.699
Length
199 amino acids
Sequence
(BLAST)
001: MDLSANPDSP LSGGGNGGGS SSSITSLSVV SGGTSQSPSR YEAQKRRDWN TFGQYLRNHR PPLSLAQCSG AHVLEFLRYL DQFGKTKVHA AACPFFGHPS
101: PPAPCPCPLR QAWGSLDALV GRLRAAYEEN GGSPESNPFA ARAVRLYLRE VREHQARARG VSYEKKKRKK PQQLTGDSSG SFCSNQHQPP PGPPPAAGC
Best Arabidopsis Sequence Match ( AT1G07090.1 )
(BLAST)
001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
Arabidopsis Description
LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.