Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G294600.2 | Wheat | nucleus, plastid | 92.24 | 91.85 |
| TraesCS1B01G305800.1 | Wheat | nucleus | 93.1 | 90.76 |
| TraesCS1A01G296900.1 | Wheat | nucleus, plastid | 91.38 | 86.89 |
| Os05t0472000-00 | Rice | nucleus | 72.84 | 71.01 |
| EES18364 | Sorghum | nucleus | 74.57 | 67.32 |
| Zm00001d038442_P001 | Maize | nucleus | 71.12 | 66.8 |
| Zm00001d010596_P001 | Maize | nucleus | 71.12 | 66.8 |
| HORVU3Hr1G088000.2 | Barley | plastid | 62.93 | 63.76 |
| GSMUA_Achr11P... | Banana | nucleus | 46.55 | 61.36 |
| GSMUA_AchrUn_... | Banana | nucleus | 47.41 | 59.14 |
| HORVU2Hr1G089190.1 | Barley | nucleus | 50.43 | 58.79 |
| HORVU6Hr1G058340.2 | Barley | nucleus | 48.71 | 55.39 |
| GSMUA_Achr7P22390_001 | Banana | endoplasmic reticulum, nucleus | 46.12 | 51.69 |
| HORVU1Hr1G060250.1 | Barley | nucleus | 62.93 | 51.05 |
| HORVU1Hr1G041240.5 | Barley | nucleus | 49.57 | 50.66 |
| HORVU6Hr1G088790.1 | Barley | nucleus | 53.88 | 48.83 |
| GSMUA_Achr11P... | Banana | nucleus | 42.67 | 48.77 |
| HORVU7Hr1G106960.2 | Barley | nucleus | 53.02 | 45.72 |
| HORVU2Hr1G060890.2 | Barley | nucleus, plastid | 48.71 | 43.46 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G070480.1 | EnsemblPlantsGene:HORVU1Hr1G070480 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF18 |
| PFAM:PF04852 | PFscan:PS51697 | SEG:seg | UniParc:UPI00029637A4 | UniProt:M0X521 | MapMan:35.1 |
Description
No Description!
Coordinates
chrchr1H:+:489909548..489911057
Molecular Weight (calculated)
24285.4 Da
IEP (calculated)
9.972
GRAVY (calculated)
-0.580
Length
232 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSPGTAGPP SSCAADAQAQ QVPVAVAPPQ PQPQQLSRYE SQKRRDWNTF LQYLRNHRPP LTLARCSGAH VIEFLKYLDQ FGKTKVHASG CAHYGQPSPP
101: APCPCPLRQA WGSLDALIGR LRAAYEESGH APESNPFAAR AVRIYLREVR DGQAKARGIP YEKKKRKRTP AAASGEGTSS SSAAAAVLAR GEGGEQSGTG
201: TGTAAASPLP SSPTGAQAEG SSVTAAPSTS RV
101: APCPCPLRQA WGSLDALIGR LRAAYEESGH APESNPFAAR AVRIYLREVR DGQAKARGIP YEKKKRKRTP AAASGEGTSS SSAAAAVLAR GEGGEQSGTG
201: TGTAAASPLP SSPTGAQAEG SSVTAAPSTS RV
001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
Arabidopsis Description
LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.