Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G224100.1 | Wheat | nucleus | 94.76 | 95.42 |
| TraesCS1A01G222500.1 | Wheat | nucleus | 94.06 | 94.72 |
| TraesCS1B01G235800.1 | Wheat | nucleus | 93.71 | 94.7 |
| Os05t0347400-01 | Rice | nucleus | 71.33 | 71.83 |
| OQU83235 | Sorghum | cytosol | 43.71 | 71.02 |
| Bra018337.1-P | Field mustard | cytosol | 39.86 | 69.09 |
| CDY10712 | Canola | cytosol, nucleus, plastid | 39.51 | 68.48 |
| Zm00001d038016_P001 | Maize | extracellular | 70.63 | 67.11 |
| CDY32697 | Canola | nucleus | 41.26 | 66.67 |
| AT1G07090.1 | Thale cress | nucleus | 45.45 | 66.33 |
| AT5G58500.1 | Thale cress | nucleus | 41.96 | 65.93 |
| CDY02038 | Canola | cytosol | 37.41 | 65.24 |
| Bra020365.1-P | Field mustard | nucleus | 41.26 | 65.19 |
| CDY59510 | Canola | nucleus | 41.26 | 65.19 |
| CDY10247 | Canola | nucleus, plastid | 45.1 | 65.15 |
| CDY06675 | Canola | nucleus, plastid | 45.1 | 65.15 |
| CDY32977 | Canola | nucleus, plastid | 41.61 | 65.03 |
| Bra015551.1-P | Field mustard | nucleus, plastid | 44.76 | 64.65 |
| Bra002642.1-P | Field mustard | nucleus, plastid | 41.26 | 64.48 |
| CDY59064 | Canola | nucleus | 44.41 | 64.14 |
| Zm00001d010507_P001 | Maize | nucleus, plastid | 70.63 | 63.92 |
| CDY52287 | Canola | nucleus | 44.06 | 63.64 |
| CDY09940 | Canola | nucleus | 44.06 | 63.64 |
| CDY20312 | Canola | nucleus | 44.06 | 63.64 |
| Bra031552.1-P | Field mustard | nucleus | 44.06 | 63.64 |
| CDX94980 | Canola | nucleus | 44.06 | 63.64 |
| CDY61050 | Canola | nucleus | 40.56 | 63.39 |
| EES19345 | Sorghum | nucleus, plastid | 72.03 | 63.38 |
| HORVU1Hr1G070480.1 | Barley | nucleus | 51.05 | 62.93 |
| HORVU3Hr1G088000.2 | Barley | plastid | 50.35 | 62.88 |
| KRH17088 | Soybean | nucleus | 47.9 | 62.84 |
| VIT_06s0004g07090.t01 | Wine grape | nucleus | 50.7 | 62.77 |
| KRG98226 | Soybean | nucleus | 50.0 | 61.64 |
| HORVU2Hr1G089190.1 | Barley | nucleus | 42.66 | 61.31 |
| KRH72732 | Soybean | nucleus | 46.85 | 61.19 |
| HORVU6Hr1G058340.2 | Barley | nucleus | 43.36 | 60.78 |
| PGSC0003DMT400078091 | Potato | nucleus | 47.2 | 60.54 |
| Solyc06g082210.1.1 | Tomato | nucleus | 45.8 | 59.01 |
| KRH30185 | Soybean | nucleus | 47.2 | 57.45 |
| Bra002644.1-P | Field mustard | cytosol, nucleus, plastid | 37.06 | 56.68 |
| GSMUA_Achr5P07420_001 | Banana | nucleus | 41.96 | 56.6 |
| CDY32978 | Canola | cytosol, nucleus, plastid | 36.01 | 55.08 |
| HORVU1Hr1G041240.5 | Barley | nucleus | 41.96 | 52.86 |
| HORVU6Hr1G088790.1 | Barley | nucleus | 44.06 | 49.22 |
| HORVU7Hr1G106960.2 | Barley | nucleus | 42.66 | 45.35 |
| HORVU2Hr1G060890.2 | Barley | nucleus, plastid | 37.06 | 40.77 |
| GSMUA_Achr9P18050_001 | Banana | nucleus | 38.46 | 38.73 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G060250.1 | EnsemblPlantsGene:HORVU1Hr1G060250 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF6 |
| PFAM:PF04852 | PFscan:PS51697 | SEG:seg | UniParc:UPI000295CF2D | UniProt:M0YLY6 | MapMan:35.1 |
Description
No Description!
Coordinates
chrchr1H:+:438316029..438318007
Molecular Weight (calculated)
30052.6 Da
IEP (calculated)
6.928
GRAVY (calculated)
-0.799
Length
286 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPGADAPRG EGASAPEESG PSSSSVAVEK AEEPQQQQAQ PPEGGGQQVA VQEHLQAPEP LSQQAPVPAG LSRYESQKRR DWNTFLQYLR NHKPPLTLAR
101: CSGAHVIEFL KYLDQFGKTK VHADGCAYFG QPNPPAPCAC PLRQAWGSLD ALIGRLRAAY EESGGRPESN PFAARAVRIY LREVREGQAK ARGIPYEKKK
201: RKRGSTSAPA APPPVVTASE AAATSGGGED DEDEPSQSTE QQRTTPASPP TPPTRSSSAG ATSTTAAAAA TTTATTRGKE AAEGSA
101: CSGAHVIEFL KYLDQFGKTK VHADGCAYFG QPNPPAPCAC PLRQAWGSLD ALIGRLRAAY EESGGRPESN PFAARAVRIY LREVREGQAK ARGIPYEKKK
201: RKRGSTSAPA APPPVVTASE AAATSGGGED DEDEPSQSTE QQRTTPASPP TPPTRSSSAG ATSTTAAAAA TTTATTRGKE AAEGSA
001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
Arabidopsis Description
LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.